Wall clock time and date at job start Mon Mar 30 2020 01:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47355 * 2 1 4 4 C 1.50703 * 109.47190 * 240.00161 * 2 1 3 5 5 H 1.07995 * 120.00130 * 239.99979 * 4 2 1 6 6 C 1.37874 * 119.99747 * 59.99976 * 4 2 1 7 7 N 1.31510 * 120.00611 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99966 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46933 * 59.99887 * 8 6 4 10 10 H 1.48494 * 109.47210 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46712 * 300.00096 * 8 6 4 12 12 N 1.46502 * 109.46905 * 120.00488 * 2 1 3 13 13 C 1.38165 * 119.99479 * 274.99795 * 12 2 1 14 14 N 1.31048 * 125.71626 * 359.97438 * 13 12 2 15 15 C 1.34727 * 108.60404 * 180.02562 * 14 13 12 16 16 C 1.34086 * 107.79289 * 0.02562 * 15 14 13 17 17 O 1.34214 * 125.70843 * 180.02562 * 13 12 2 18 18 H 1.08997 * 109.47013 * 299.99938 * 1 2 3 19 19 H 1.09000 * 109.46893 * 60.00123 * 1 2 3 20 20 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 21 21 H 0.96999 * 120.00521 * 180.02562 * 7 6 4 22 22 H 0.96997 * 120.00213 * 95.00093 * 12 2 1 23 23 H 1.07997 * 126.10214 * 180.02562 * 15 14 13 24 24 H 1.08001 * 126.35818 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0081 9 1 1.8258 -2.5201 -4.0079 10 1 1.8260 -0.4205 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 2.1502 -0.0015 2.3863 14 7 1.8729 1.2659 2.5711 15 6 2.1269 1.5784 3.8568 16 6 2.5708 0.4704 4.4678 17 8 2.5848 -0.5177 3.5465 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7081 1.1609 -3.4844 22 1 2.2490 -1.6319 1.1525 23 1 1.9963 2.5482 4.3137 24 1 2.8623 0.3838 5.5041 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138801.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:54 Heat of formation + Delta-G solvation = 6.047846 kcal Electronic energy + Delta-G solvation = -10708.023778 eV Core-core repulsion = 8622.526729 eV Total energy + Delta-G solvation = -2085.497049 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.85027 -37.84222 -35.31921 -34.59805 -31.32054 -29.03393 -27.30133 -23.80712 -23.06420 -21.70198 -19.49921 -18.15587 -17.46928 -16.96582 -16.66554 -15.69108 -14.95241 -14.47139 -14.02731 -13.78088 -13.18540 -12.92312 -12.73391 -12.32387 -12.16479 -12.08004 -11.24748 -11.07284 -10.92136 -10.50647 -8.52409 -8.17728 -6.35342 0.93027 1.39121 1.48081 1.49490 1.57580 2.10663 2.42473 3.03939 3.13137 4.13424 4.33991 4.64601 4.79837 5.01012 5.09218 5.15743 5.40810 5.49190 5.64299 5.80955 6.01266 6.26426 6.66232 6.73458 7.30845 7.44128 8.88061 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.086374 B = 0.010192 C = 0.009684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.093689 B = 2746.670513 C = 2890.548118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.300 3.700 3 H 0.011 0.989 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.974 3.026 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.672 5.672 13 C 0.445 3.555 14 N -0.588 5.588 15 C -0.033 4.033 16 C -0.122 4.122 17 O -0.246 6.246 18 H 0.017 0.983 19 H 0.071 0.929 20 H 0.035 0.965 21 H 0.268 0.732 22 H 0.412 0.588 23 H 0.205 0.795 24 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -2.455 8.952 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.198 3.802 3 H 0.029 0.971 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.798 3.202 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.319 5.319 13 C 0.146 3.854 14 N -0.330 5.330 15 C -0.170 4.170 16 C -0.193 4.193 17 O -0.134 6.134 18 H 0.036 0.964 19 H 0.090 0.910 20 H 0.054 0.946 21 H 0.077 0.923 22 H 0.248 0.752 23 H 0.222 0.778 24 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.002 -1.844 8.270 8.707 hybrid contribution 0.469 -0.883 -0.233 1.026 sum 2.471 -2.727 8.037 8.840 Atomic orbital electron populations 1.21964 0.98243 0.99344 0.99925 1.18406 0.90920 0.91843 0.79035 0.97090 1.21477 1.33049 1.13865 0.90699 0.91134 1.25734 0.94785 0.95592 1.02037 1.70023 1.36574 1.23667 1.24864 0.85376 0.78587 0.78663 0.77572 1.19042 1.20848 1.19702 1.44155 1.71723 1.12616 1.03404 1.22165 0.93345 0.86859 0.82993 1.70941 1.31134 1.10828 1.20135 1.23659 1.02442 1.01899 0.89005 1.25290 1.12241 0.85636 0.96095 1.84406 1.69226 1.41205 1.18558 0.96427 0.90990 0.94575 0.92326 0.75178 0.77784 0.72697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 9.27 71.98 0.67 -6.21 14 2 C 0.30 15.62 2.71 44.25 0.12 15.74 14 3 H 0.01 0.67 7.79 -2.39 -0.02 0.65 14 4 C -0.55 -29.49 8.73 25.60 0.22 -29.27 14 5 H 0.07 3.56 7.74 -2.91 -0.02 3.53 14 6 C 0.02 1.02 5.30 84.65 0.45 1.47 14 7 N -0.91 -51.68 11.32 21.45 0.24 -51.44 14 8 Si 0.97 41.90 29.54 68.60 2.03 43.92 14 9 H -0.27 -10.94 7.11 99.48 0.71 -10.23 14 10 H -0.28 -11.99 7.11 99.48 0.71 -11.29 14 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 14 12 N -0.67 -30.04 5.20 -444.42 -2.31 -32.35 14 13 C 0.45 19.17 9.02 179.08 1.62 20.78 14 14 N -0.59 -25.92 10.71 -313.90 -3.36 -29.28 14 15 C -0.03 -1.09 11.88 83.30 0.99 -0.10 14 16 C -0.12 -3.42 12.16 66.87 0.81 -2.61 14 17 O -0.25 -8.89 10.80 -9.71 -0.10 -8.99 14 18 H 0.02 0.84 8.14 -2.39 -0.02 0.82 14 19 H 0.07 3.95 6.07 -2.39 -0.01 3.94 14 20 H 0.04 1.70 8.14 -2.39 -0.02 1.68 14 21 H 0.27 14.31 8.31 -92.71 -0.77 13.54 14 22 H 0.41 16.30 8.66 -92.71 -0.80 15.49 14 23 H 0.21 4.94 8.06 -2.91 -0.02 4.91 14 24 H 0.26 4.00 8.06 -2.91 -0.02 3.98 14 Total: -1.00 -63.83 218.93 1.77 -62.06 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.41 Total: 16.28 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.88 Total: -0.20 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -5.43 Total: -113.07 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.10 Total: -8.99 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -63.83 1.77 -62.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138801.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.107 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds