Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47488 * 59.99905 * 8 6 4 10 10 H 1.48498 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47344 * 299.99422 * 8 6 4 12 12 C 1.38165 * 120.00063 * 179.97438 * 2 1 3 13 13 N 1.31046 * 125.71504 * 179.69589 * 12 2 1 14 14 C 1.34728 * 108.60637 * 179.84056 * 13 12 2 15 15 C 1.34090 * 107.79062 * 0.42038 * 14 13 12 16 16 O 1.34216 * 125.71009 * 0.02562 * 12 2 1 17 17 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 18 18 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 19 19 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 20 20 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 21 21 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 22 22 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 23 23 H 1.07997 * 126.10591 * 180.13587 * 14 13 12 24 24 H 1.08002 * 126.36307 * 179.71625 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1403 3.5952 -4.1334 10 1 4.1805 4.7028 -3.4340 11 1 4.2397 2.3817 -4.1346 12 6 2.1558 -1.1965 0.0005 13 7 3.4598 -1.3270 -0.0051 14 6 3.7604 -2.6403 0.0012 15 6 2.6072 -3.3246 0.0015 16 8 1.6037 -2.4199 0.0006 17 1 -0.3633 0.0001 1.0276 18 1 -0.3633 0.8900 -0.5139 19 1 -0.3633 -0.8899 -0.5139 20 1 1.6085 2.0284 0.5138 21 1 3.1500 1.1383 0.5138 22 1 4.0321 4.4429 -0.8504 23 1 4.7529 -3.0660 0.0009 24 1 2.5003 -4.3993 0.0015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156762.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = 37.898049 kcal Electronic energy + Delta-G solvation = -10760.714497 eV Core-core repulsion = 8676.598576 eV Total energy + Delta-G solvation = -2084.115921 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.29993 -36.14697 -33.77120 -32.58975 -28.85960 -27.87753 -25.12895 -22.92192 -21.51361 -19.93691 -17.17034 -16.58314 -15.77297 -15.16335 -14.92052 -14.07335 -13.41158 -13.11636 -12.40374 -12.15910 -11.72134 -11.25584 -10.95579 -10.62501 -10.59741 -10.13233 -9.83881 -9.41282 -8.95357 -8.43581 -6.81574 -6.02575 -4.09811 2.39209 2.95859 3.32907 3.36944 3.41068 3.70399 4.22267 4.44712 5.29022 5.46114 5.67079 5.70170 5.94036 6.15649 6.20181 6.57729 6.86814 7.00348 7.38867 7.73547 7.90895 8.20064 8.21067 8.81460 8.97409 9.54804 11.02817 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.052952 B = 0.012117 C = 0.011179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.651115 B = 2310.316255 C = 2504.178892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.563 5.563 3 C 0.267 3.733 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.473 3.527 13 N -0.538 5.538 14 C -0.005 4.005 15 C -0.155 4.155 16 O -0.243 6.243 17 H 0.044 0.956 18 H 0.080 0.920 19 H 0.055 0.945 20 H 0.040 0.960 21 H 0.049 0.951 22 H 0.264 0.736 23 H 0.172 0.828 24 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -8.789 1.160 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.289 5.289 3 C 0.149 3.851 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.176 3.824 13 N -0.277 5.277 14 C -0.144 4.144 15 C -0.227 4.227 16 O -0.132 6.132 17 H 0.062 0.938 18 H 0.098 0.902 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.189 0.811 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.588 -7.986 1.203 8.837 hybrid contribution -0.193 -0.394 -1.033 1.122 sum -3.782 -8.379 0.171 9.195 Atomic orbital electron populations 1.21560 0.79428 1.02763 1.00559 1.46207 1.04896 1.00504 1.77320 1.19419 0.92353 0.75624 0.97676 1.21437 1.36719 1.06360 0.92310 0.92454 1.24903 0.95235 0.96271 0.97471 1.69916 1.38259 1.14405 1.30787 0.86538 0.78350 0.77787 0.84618 1.20290 1.21163 1.20176 1.21991 0.85686 0.80688 0.94042 1.71069 1.09508 1.17726 1.29391 1.23098 0.99286 0.89309 1.02661 1.24144 0.85680 0.94421 1.18438 1.84349 1.38311 1.15683 1.74854 0.93795 0.90151 0.92569 0.94213 0.93279 0.92590 0.81100 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.60 59.85 0.63 2.41 14 2 N -0.56 -12.76 2.95 -185.31 -0.55 -13.31 14 3 C 0.27 6.99 5.29 -5.19 -0.03 6.96 14 4 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 14 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 14 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 14 7 N -0.89 -26.33 13.29 55.43 0.74 -25.59 14 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 14 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 14 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 14 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 12 C 0.47 10.75 8.43 -86.99 -0.73 10.02 14 13 N -0.54 -12.67 10.62 -14.45 -0.15 -12.82 14 14 C 0.00 -0.08 11.88 -17.74 -0.21 -0.29 14 15 C -0.15 -2.55 12.16 29.27 0.36 -2.20 14 16 O -0.24 -4.80 10.23 3.68 0.04 -4.76 14 17 H 0.04 0.68 8.14 -51.93 -0.42 0.25 14 18 H 0.08 1.37 8.07 -51.93 -0.42 0.95 14 19 H 0.06 0.90 7.71 -51.93 -0.40 0.50 14 20 H 0.04 1.04 8.07 -51.93 -0.42 0.62 14 21 H 0.05 1.42 7.65 -51.92 -0.40 1.02 14 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 14 23 H 0.17 2.48 8.06 -52.49 -0.42 2.06 14 24 H 0.20 2.27 8.06 -52.49 -0.42 1.85 14 LS Contribution 223.02 15.07 3.36 3.36 Total: -1.00 -31.99 223.02 -4.44 -36.43 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -2.45 Total: -3.42 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.40 Total: 3.27 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.04 Total: -51.72 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.04 Total: -4.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -31.99 -4.44 -36.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156762.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.329 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds