Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47042 * 2 1 4 4 C 1.39930 * 125.73671 * 124.99924 * 3 2 1 5 5 C 1.35913 * 107.92865 * 179.97438 * 4 3 2 6 6 O 1.35684 * 126.28347 * 179.97438 * 5 4 3 7 7 N 1.36606 * 107.43399 * 359.97438 * 5 4 3 8 8 C 1.37373 * 126.14580 * 179.97438 * 7 5 4 9 9 H 1.08001 * 119.99303 * 6.42551 * 8 7 5 10 10 C 1.38928 * 120.00630 * 186.41848 * 8 7 5 11 11 N 1.31345 * 119.99393 * 6.15545 * 10 8 7 12 12 Si 1.86798 * 120.00126 * 186.43016 * 10 8 7 13 13 H 1.48497 * 109.47204 * 264.74776 * 12 10 8 14 14 H 1.48497 * 109.47007 * 24.75046 * 12 10 8 15 15 H 1.48501 * 109.47037 * 144.75376 * 12 10 8 16 16 N 1.31017 * 125.73458 * 305.28545 * 3 2 1 17 17 H 1.08995 * 109.46942 * 60.00349 * 1 2 3 18 18 H 1.09003 * 109.47075 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47466 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47058 * 239.99727 * 2 1 3 21 21 H 1.09005 * 109.46964 * 119.99699 * 2 1 3 22 22 H 1.07996 * 126.03239 * 359.97438 * 4 3 2 23 23 H 0.96699 * 113.99780 * 270.02398 * 6 5 4 24 24 H 0.97000 * 119.99567 * 180.27184 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9189 1.9742 0.9304 5 6 3.1259 3.2735 0.5896 6 8 3.9223 4.1576 1.2416 7 7 2.3850 3.5260 -0.5299 8 6 2.3111 4.7231 -1.1998 9 1 2.9508 5.5439 -0.9108 10 6 1.4138 4.8779 -2.2490 11 7 0.5530 3.9244 -2.5229 12 14 1.4366 6.4387 -3.2750 13 1 0.4288 7.3930 -2.7469 14 1 2.7857 7.0557 -3.2075 15 1 1.1134 6.1082 -4.6862 16 7 1.7082 2.3470 -0.8681 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5138 0.8901 22 1 3.3607 1.4597 1.7709 23 1 3.4707 4.6551 1.9371 24 1 -0.0710 4.0308 -3.2580 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200878.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = 24.424162 kcal Electronic energy + Delta-G solvation = -10837.843071 eV Core-core repulsion = 8753.142879 eV Total energy + Delta-G solvation = -2084.700193 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.59746 -35.96313 -33.97814 -32.39587 -29.57323 -27.41800 -25.14009 -22.76755 -20.04213 -18.83673 -18.02874 -16.06704 -15.17594 -14.45473 -14.04274 -13.18785 -12.95878 -12.82060 -12.57804 -11.88033 -11.46070 -11.08740 -11.01072 -10.75298 -10.51681 -10.38409 -10.03029 -9.32949 -8.58771 -7.90929 -7.11268 -6.58218 -4.25515 2.92924 3.06526 3.11797 3.42351 3.82725 4.11795 4.50386 4.96433 5.45646 5.85328 5.97931 6.12248 6.34867 6.49055 6.72674 6.87249 7.00355 7.10637 7.12049 7.46192 7.75080 8.17312 8.35021 8.72739 9.44192 9.67413 10.38770 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.015761 C = 0.011797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.685524 B = 1776.134065 C = 2372.953284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.022 4.022 3 C -0.015 4.015 4 C -0.308 4.308 5 C 0.129 3.871 6 O -0.471 6.471 7 N -0.154 5.154 8 C -0.323 4.323 9 H 0.116 0.884 10 C 0.049 3.951 11 N -0.772 5.772 12 Si 0.933 3.067 13 H -0.271 1.271 14 H -0.263 1.263 15 H -0.275 1.275 16 N -0.246 5.246 17 H 0.063 0.937 18 H 0.042 0.958 19 H 0.047 0.953 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.119 0.881 23 H 0.366 0.634 24 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -0.878 2.736 2.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 C -0.169 4.169 4 C -0.341 4.341 5 C -0.042 4.042 6 O -0.271 6.271 7 N 0.070 4.930 8 C -0.456 4.456 9 H 0.134 0.866 10 C -0.168 4.168 11 N -0.399 5.399 12 Si 0.757 3.243 13 H -0.197 1.197 14 H -0.187 1.187 15 H -0.200 1.200 16 N -0.081 5.081 17 H 0.082 0.918 18 H 0.062 0.938 19 H 0.067 0.933 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.137 0.863 23 H 0.218 0.782 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.606 -0.833 1.216 1.594 hybrid contribution 0.191 0.896 0.654 1.126 sum -0.415 0.062 1.870 1.917 Atomic orbital electron populations 1.21664 0.95699 0.99835 1.02610 1.19588 0.95256 0.90526 1.00791 1.21720 1.01156 0.96452 0.97586 1.20249 1.12415 0.94583 1.06854 1.18661 1.02264 0.90192 0.93094 1.84826 1.35067 1.55742 1.51454 1.45450 1.24023 1.08310 1.15234 1.19933 1.22633 0.88190 1.14795 0.86636 1.25624 0.94549 0.99261 0.97384 1.70206 1.13703 1.30981 1.25028 0.85832 0.79399 0.80126 0.78947 1.19673 1.18701 1.19967 1.78218 1.18372 0.89608 1.21862 0.91758 0.93848 0.93344 0.92142 0.91994 0.86267 0.78210 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.87 37.16 0.37 -2.21 14 2 C -0.02 -0.44 6.51 -27.88 -0.18 -0.62 14 3 C -0.02 -0.38 6.49 -82.31 -0.53 -0.91 14 4 C -0.31 -7.60 10.74 -39.78 -0.43 -8.03 14 5 C 0.13 3.37 7.97 -16.26 -0.13 3.24 14 6 O -0.47 -10.63 13.56 -18.75 -0.25 -10.88 14 7 N -0.15 -4.43 3.74 -11.64 -0.04 -4.47 14 8 C -0.32 -8.98 10.18 -14.81 -0.15 -9.13 14 9 H 0.12 3.00 7.84 -52.49 -0.41 2.59 14 10 C 0.05 1.28 5.48 -17.50 -0.10 1.19 14 11 N -0.77 -21.53 11.90 55.49 0.66 -20.87 14 12 Si 0.93 19.41 29.56 -169.99 -5.02 14.38 14 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 14 H -0.26 -5.34 7.11 56.52 0.40 -4.94 14 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 16 N -0.25 -7.05 10.44 33.71 0.35 -6.70 14 17 H 0.06 1.33 8.14 -51.93 -0.42 0.90 14 18 H 0.04 0.64 8.14 -51.93 -0.42 0.22 14 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 14 20 H 0.06 1.15 8.14 -51.93 -0.42 0.72 14 21 H 0.06 1.06 8.12 -51.93 -0.42 0.64 14 22 H 0.12 2.59 8.06 -52.49 -0.42 2.17 14 23 H 0.37 6.33 9.06 45.56 0.41 6.75 14 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 14 LS Contribution 221.70 15.07 3.34 3.34 Total: -1.00 -32.06 221.70 -3.79 -35.85 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -1.67 Total: 5.82 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.15 Total: -16.47 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.97 Total: -32.04 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.25 Total: -10.88 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -32.06 -3.79 -35.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200878.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.274 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds