Wall clock time and date at job start Mon Mar 30 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.37714 * 120.00309 * 180.02562 * 2 1 3 5 5 N 1.30840 * 125.16602 * 359.97438 * 4 2 1 6 6 C 1.36326 * 108.53325 * 180.02562 * 5 4 2 7 7 C 1.41156 * 126.62297 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99580 * 180.02562 * 7 6 5 9 9 C 1.39656 * 119.99897 * 0.02737 * 7 6 5 10 10 N 1.31042 * 119.99826 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99869 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47716 * 89.99654 * 11 9 7 13 13 H 1.48508 * 109.47196 * 209.99966 * 11 9 7 14 14 H 1.48497 * 109.47229 * 329.99389 * 11 9 7 15 15 C 1.38851 * 106.75860 * 0.02562 * 6 5 4 16 16 O 1.34330 * 125.17482 * 179.69262 * 4 2 1 17 17 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 18 18 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 19 19 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 20 20 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 21 21 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 22 22 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 23 23 H 0.97003 * 119.99601 * 180.02562 * 10 9 7 24 24 H 1.07998 * 126.67232 * 180.02562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1536 -1.1926 -0.0005 5 7 1.6042 -2.3800 -0.0006 6 6 2.5953 -3.3161 -0.0006 7 6 2.4296 -4.7179 -0.0001 8 1 3.2951 -5.3639 0.0002 9 6 1.1465 -5.2693 -0.0002 10 7 0.0964 -4.4854 -0.0002 11 14 0.9272 -7.1244 0.0011 12 1 0.8687 -7.6150 1.4015 13 1 -0.3348 -7.4742 -0.6991 14 1 2.0734 -7.7588 -0.6981 15 6 3.7992 -2.6244 0.0000 16 8 3.4914 -1.3137 -0.0065 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 0.8900 0.5139 19 1 -0.3633 -0.8900 0.5139 20 1 1.4892 2.0973 0.0005 21 1 2.8242 1.3264 0.8899 22 1 2.8241 1.3265 -0.8900 23 1 -0.7948 -4.8685 0.0002 24 1 4.7900 -3.0542 -0.0002 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261202376.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:33 Heat of formation + Delta-G solvation = 8.803183 kcal Electronic energy + Delta-G solvation = -10831.929151 eV Core-core repulsion = 8746.551582 eV Total energy + Delta-G solvation = -2085.377569 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.86343 -37.55175 -35.96869 -33.93201 -30.52771 -28.93717 -27.46173 -25.41519 -22.36772 -21.16254 -19.31559 -17.85967 -17.11244 -16.53133 -16.11945 -15.85638 -15.19640 -14.64253 -13.97082 -13.44744 -13.29788 -12.97715 -12.77279 -12.66600 -12.39394 -11.83674 -11.79758 -11.06646 -10.39797 -10.16742 -8.38592 -8.29314 -6.33321 1.20624 1.41967 1.56101 1.58751 1.61991 2.28973 2.48038 3.14484 3.53984 4.19294 4.46648 4.52456 4.75968 4.82520 4.88564 4.95366 5.16348 5.36162 5.48874 5.78899 6.02456 6.37719 6.57195 6.87546 7.02448 7.88322 8.57885 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.069126 B = 0.012575 C = 0.010723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.961719 B = 2226.059942 C = 2610.574148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.597 5.597 3 C 0.103 3.897 4 C 0.401 3.599 5 N -0.530 5.530 6 C 0.167 3.833 7 C -0.487 4.487 8 H 0.088 0.912 9 C 0.026 3.974 10 N -0.800 5.800 11 Si 0.994 3.006 12 H -0.263 1.263 13 H -0.269 1.269 14 H -0.256 1.256 15 C -0.346 4.346 16 O -0.251 6.251 17 H 0.047 0.953 18 H 0.110 0.890 19 H 0.047 0.953 20 H 0.121 0.879 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.277 0.723 24 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 6.337 0.169 6.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.328 5.328 3 C -0.039 4.039 4 C 0.103 3.897 5 N -0.274 5.274 6 C 0.051 3.949 7 C -0.519 4.519 8 H 0.106 0.894 9 C -0.190 4.190 10 N -0.425 5.425 11 Si 0.814 3.186 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.180 1.180 15 C -0.414 4.414 16 O -0.141 6.141 17 H 0.065 0.935 18 H 0.129 0.871 19 H 0.066 0.934 20 H 0.139 0.861 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.014 6.402 0.162 6.713 hybrid contribution 0.827 -0.667 -0.034 1.063 sum -1.187 5.735 0.127 5.858 Atomic orbital electron populations 1.21596 0.75312 1.03316 1.01540 1.45108 1.05793 0.99516 1.82365 1.21781 0.97610 0.83479 1.01061 1.22586 0.78842 0.90146 0.98147 1.71659 1.31140 0.95901 1.28664 1.19719 0.86849 0.94643 0.93707 1.18938 0.94315 0.89113 1.49569 0.89418 1.26883 0.94802 1.05471 0.91872 1.70227 0.99171 1.38432 1.34655 0.85054 0.78707 0.75576 0.79287 1.18798 1.19370 1.17995 1.24453 0.99782 0.77813 1.39370 1.83861 1.23586 1.29814 1.76818 0.93488 0.87130 0.93397 0.86081 0.93270 0.93419 0.91346 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.11 10.52 127.77 1.34 5.45 14 2 N -0.60 -23.61 3.35 -872.18 -2.93 -26.54 14 3 C 0.10 2.86 10.51 127.77 1.34 4.20 14 4 C 0.40 21.05 8.39 179.29 1.50 22.56 14 5 N -0.53 -31.91 8.82 -306.36 -2.70 -34.61 14 6 C 0.17 10.27 6.69 39.31 0.26 10.53 14 7 C -0.49 -28.92 9.38 23.33 0.22 -28.71 14 8 H 0.09 4.86 7.84 -2.91 -0.02 4.83 14 9 C 0.03 1.45 5.49 85.15 0.47 1.92 14 10 N -0.80 -46.45 11.95 21.78 0.26 -46.19 14 11 Si 0.99 41.08 29.56 68.60 2.03 43.10 14 12 H -0.26 -10.43 7.11 99.48 0.71 -9.73 14 13 H -0.27 -10.56 7.11 99.48 0.71 -9.85 14 14 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 15 C -0.35 -19.39 12.28 67.97 0.83 -18.55 14 16 O -0.25 -13.45 10.40 -6.05 -0.06 -13.51 14 17 H 0.05 1.50 8.14 -2.39 -0.02 1.48 14 18 H 0.11 2.48 7.92 -2.39 -0.02 2.46 14 19 H 0.05 1.96 7.61 -2.38 -0.02 1.94 14 20 H 0.12 2.18 7.79 -2.39 -0.02 2.16 14 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 14 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 14 23 H 0.28 14.51 8.30 -92.71 -0.77 13.74 14 24 H 0.20 9.82 8.06 -2.91 -0.02 9.80 14 Total: -1.00 -74.06 220.62 3.76 -70.30 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.19 Total: 10.05 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.98 Total: -2.60 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -5.37 Total: -107.34 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.06 Total: -13.51 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -74.06 3.76 -70.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202376.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.103 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds