Wall clock time and date at job start Mon Mar 30 2020 01:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36600 * 125.90909 * 2 1 4 4 C 1.34826 * 108.44801 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.95547 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46817 * 95.00245 * 5 4 3 7 7 H 1.08003 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00302 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99832 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46901 * 89.99815 * 10 8 6 12 12 H 1.48495 * 109.47068 * 210.00475 * 10 8 6 13 13 H 1.48508 * 109.46958 * 330.00281 * 10 8 6 14 14 C 1.41471 * 108.08611 * 0.24292 * 4 3 2 15 15 O 1.21774 * 126.19415 * 179.75461 * 14 4 3 16 16 N 1.34867 * 107.61372 * 359.60179 * 14 4 3 17 17 H 0.96998 * 126.16611 * 180.14548 * 16 14 4 18 18 H 1.09002 * 109.47054 * 90.00128 * 1 2 3 19 19 H 1.09002 * 109.47363 * 209.99895 * 1 2 3 20 20 H 1.08998 * 109.47196 * 329.99802 * 1 2 3 21 21 H 1.07999 * 125.77634 * 359.97438 * 3 2 1 22 22 H 1.09000 * 109.47318 * 214.99624 * 5 4 3 23 23 H 1.09000 * 109.47161 * 335.00255 * 5 4 3 24 24 H 0.97002 * 119.99998 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.1064 0.0000 4 6 3.5523 0.7018 -0.0006 5 6 4.7625 1.6000 -0.0013 6 6 5.2403 1.8001 1.4138 7 1 4.7195 1.3248 2.2319 8 6 6.3417 2.5908 1.6643 9 7 6.7590 2.7650 2.8992 10 14 7.2420 3.4135 0.2494 11 1 6.6490 4.7512 -0.0037 12 1 8.6774 3.5662 0.5980 13 1 7.1153 2.5770 -0.9712 14 6 3.5678 -0.7128 -0.0067 15 8 4.5583 -1.4211 -0.0130 16 7 2.2869 -1.1349 -0.0007 17 1 1.9883 -2.0578 -0.0008 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5139 21 1 1.9268 2.1317 -0.0004 22 1 5.5557 1.1405 -0.5910 23 1 4.4989 2.5644 -0.4356 24 1 7.5337 3.3216 3.0755 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213725.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:29 Heat of formation + Delta-G solvation = 14.623441 kcal Electronic energy + Delta-G solvation = -10658.910111 eV Core-core repulsion = 8573.784927 eV Total energy + Delta-G solvation = -2085.125184 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.30718 -38.10363 -35.44667 -33.51536 -32.82715 -30.11935 -26.54644 -24.27909 -23.03748 -20.86449 -18.88441 -18.75212 -16.75162 -16.47599 -16.18539 -15.95350 -14.84009 -14.78597 -14.64250 -13.86851 -13.53670 -13.23820 -12.50271 -12.39895 -12.15241 -11.85381 -11.53968 -10.82376 -10.65019 -10.33785 -8.42913 -8.20200 -6.22580 0.83542 0.94125 1.39120 1.45132 1.58233 2.40997 2.44593 3.03220 3.14018 3.97645 4.24760 4.59521 4.75247 4.81152 4.85456 5.19318 5.22859 5.49028 5.60063 5.74866 6.30264 6.39413 6.64478 6.82605 7.39007 7.45117 8.96907 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.059852 B = 0.011563 C = 0.011046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.711369 B = 2421.037420 C = 2534.240409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.393 5.393 3 C 0.177 3.823 4 C -0.327 4.327 5 C 0.072 3.928 6 C -0.510 4.510 7 H 0.019 0.981 8 C -0.002 4.002 9 N -0.957 5.957 10 Si 0.955 3.045 11 H -0.248 1.248 12 H -0.287 1.287 13 H -0.257 1.257 14 C 0.508 3.492 15 O -0.618 6.618 16 N -0.517 5.517 17 H 0.440 0.560 18 H 0.090 0.910 19 H 0.094 0.906 20 H 0.121 0.879 21 H 0.231 0.769 22 H 0.000 1.000 23 H 0.047 0.953 24 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 -1.246 -8.846 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.190 5.190 3 C 0.043 3.957 4 C -0.340 4.340 5 C 0.034 3.966 6 C -0.548 4.548 7 H 0.037 0.963 8 C -0.198 4.198 9 N -0.599 5.599 10 Si 0.778 3.222 11 H -0.172 1.172 12 H -0.214 1.214 13 H -0.181 1.181 14 C 0.307 3.693 15 O -0.503 6.503 16 N -0.265 5.265 17 H 0.288 0.712 18 H 0.108 0.892 19 H 0.113 0.887 20 H 0.139 0.861 21 H 0.247 0.753 22 H 0.018 0.982 23 H 0.065 0.935 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.007 -1.676 -8.751 19.200 hybrid contribution 0.764 -0.465 0.125 0.903 sum -16.243 -2.141 -8.625 18.516 Atomic orbital electron populations 1.22445 0.69871 1.06722 1.05037 1.46628 1.04436 0.96053 1.71879 1.22729 0.88158 0.92793 0.92056 1.20581 0.97189 0.93825 1.22362 1.17692 0.90902 0.93616 0.94402 1.21370 1.12534 1.28105 0.92811 0.96284 1.26061 0.97744 0.97322 0.98637 1.70087 1.26848 1.41280 1.21703 0.85588 0.77379 0.79722 0.79513 1.17222 1.21351 1.18141 1.17334 0.81540 0.90853 0.79599 1.90766 1.35488 1.64913 1.59130 1.45869 1.03283 1.03115 1.74280 0.71184 0.89154 0.88744 0.86056 0.75289 0.98187 0.93478 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.48 127.77 1.47 2.34 14 2 N -0.39 -9.22 4.06 -368.57 -1.50 -10.71 14 3 C 0.18 5.23 11.39 83.17 0.95 6.18 14 4 C -0.33 -14.53 5.32 -19.85 -0.11 -14.63 14 5 C 0.07 3.77 4.50 29.10 0.13 3.91 14 6 C -0.51 -32.06 9.65 25.60 0.25 -31.82 14 7 H 0.02 1.33 7.98 -2.91 -0.02 1.30 14 8 C 0.00 -0.15 5.47 84.65 0.46 0.32 14 9 N -0.96 -63.54 13.96 21.45 0.30 -63.24 14 10 Si 0.96 46.96 27.47 68.60 1.88 48.85 14 11 H -0.25 -10.97 7.11 99.48 0.71 -10.26 14 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 14 13 H -0.26 -12.31 6.54 99.48 0.65 -11.66 14 14 C 0.51 23.60 8.32 85.02 0.71 24.31 14 15 O -0.62 -35.33 18.02 -4.59 -0.08 -35.41 14 16 N -0.52 -16.18 7.24 -180.04 -1.30 -17.48 14 17 H 0.44 10.63 8.96 -213.31 -1.91 8.71 14 18 H 0.09 0.48 8.14 -2.39 -0.02 0.46 14 19 H 0.09 0.60 8.14 -2.39 -0.02 0.58 14 20 H 0.12 0.55 8.14 -2.39 -0.02 0.53 14 21 H 0.23 4.47 8.06 -2.91 -0.02 4.45 14 22 H 0.00 -0.01 7.20 -2.39 -0.02 -0.03 14 23 H 0.05 2.14 7.57 -2.39 -0.02 2.13 14 24 H 0.26 16.28 8.31 -92.71 -0.77 15.51 14 Total: -1.00 -91.33 220.13 2.40 -88.93 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -0.76 Total: -1.53 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 3.86 Total: -9.40 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.50 Total: -91.44 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.08 Total: -35.41 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.85 kcal Total: -91.33 2.40 -88.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213725.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.557 kcal (2) G-P(sol) polarization free energy of solvation -91.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds