Wall clock time and date at job start Mon Mar 30 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47606 * 2 1 4 4 N 1.40060 * 125.89652 * 90.01724 * 3 2 1 5 5 C 1.32906 * 108.07498 * 179.97438 * 4 3 2 6 6 C 1.41399 * 126.08325 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99831 * 186.13279 * 6 5 4 8 8 C 1.39827 * 120.00453 * 6.13296 * 6 5 4 9 9 N 1.30901 * 120.00103 * 184.00451 * 8 6 5 10 10 Si 1.86801 * 119.99664 * 4.00524 * 8 6 5 11 11 H 1.48506 * 109.46880 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.47162 * 299.99903 * 10 8 6 13 13 H 1.48506 * 109.47182 * 60.00110 * 10 8 6 14 14 C 1.41728 * 107.83044 * 0.24472 * 5 4 3 15 15 C 1.35294 * 107.82327 * 359.59983 * 14 5 4 16 16 O 1.35723 * 125.96867 * 180.14635 * 15 14 5 17 17 H 1.09002 * 109.47194 * 59.99884 * 1 2 3 18 18 H 1.09000 * 109.47704 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47084 * 300.00098 * 1 2 3 20 20 H 1.09001 * 109.46951 * 239.99363 * 2 1 3 21 21 H 1.09008 * 109.47136 * 119.99678 * 2 1 3 22 22 H 0.97001 * 120.00563 * 354.83213 * 9 8 6 23 23 H 1.07991 * 126.08632 * 179.73791 * 14 5 4 24 24 H 0.96703 * 113.99908 * 270.29709 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2925 2.1553 1.1346 5 6 2.7148 3.3480 0.7278 6 6 3.0957 4.4252 1.5609 7 1 3.3300 5.3863 1.1275 8 6 3.1690 4.2462 2.9457 9 7 3.4450 5.2624 3.7233 10 14 2.8731 2.5569 3.6860 11 1 3.0069 2.6334 5.1630 12 1 1.5054 2.0959 3.3366 13 1 3.8713 1.5985 3.1470 14 6 2.7094 3.3502 -0.6894 15 6 2.2848 2.1342 -1.1038 16 8 2.1437 1.7360 -2.3936 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8932 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 3.6722 6.1221 3.3358 23 1 2.9955 4.1748 -1.3254 24 1 1.2701 1.9155 -2.7673 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224834.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:18 Heat of formation + Delta-G solvation = 14.298599 kcal Electronic energy + Delta-G solvation = -10882.426586 eV Core-core repulsion = 8797.287316 eV Total energy + Delta-G solvation = -2085.139270 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.75371 -36.44201 -34.09602 -32.83008 -29.17994 -27.85034 -25.43781 -22.46637 -20.35563 -19.39786 -18.11397 -16.63936 -15.76838 -14.33863 -13.97798 -13.71711 -13.33135 -12.98157 -12.35157 -12.19917 -11.79869 -11.61004 -10.99365 -10.69908 -10.53066 -10.26432 -9.43504 -9.07644 -8.35592 -7.99817 -7.39988 -7.02057 -4.50074 2.77126 3.30116 3.56058 3.72968 4.11846 4.19170 4.50861 4.76856 5.18363 5.43631 5.50158 5.58109 5.84642 5.96142 6.34864 6.53105 6.82174 6.95635 7.28568 7.52374 7.80004 8.29474 8.54206 8.58566 8.96410 9.37961 10.34563 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.050200 B = 0.016481 C = 0.013033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.637528 B = 1698.524283 C = 2147.895031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 N -0.411 5.411 4 N -0.404 5.404 5 C 0.218 3.782 6 C -0.495 4.495 7 H 0.079 0.921 8 C 0.051 3.949 9 N -0.837 5.837 10 Si 1.107 2.893 11 H -0.311 1.311 12 H -0.265 1.265 13 H -0.283 1.283 14 C -0.306 4.306 15 C 0.241 3.759 16 O -0.481 6.481 17 H 0.050 0.950 18 H 0.064 0.936 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.279 0.721 23 H 0.128 0.872 24 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -7.768 -6.744 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 N -0.202 5.202 4 N -0.240 5.240 5 C 0.069 3.931 6 C -0.535 4.535 7 H 0.097 0.903 8 C -0.168 4.168 9 N -0.463 5.463 10 Si 0.937 3.063 11 H -0.241 1.241 12 H -0.192 1.192 13 H -0.209 1.209 14 C -0.338 4.338 15 C 0.076 3.924 16 O -0.283 6.283 17 H 0.070 0.930 18 H 0.083 0.917 19 H 0.083 0.917 20 H 0.094 0.906 21 H 0.100 0.900 22 H 0.090 0.910 23 H 0.146 0.854 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.653 -9.567 -4.456 11.534 hybrid contribution -0.195 1.587 -2.571 3.027 sum -4.848 -7.980 -7.026 11.685 Atomic orbital electron populations 1.22176 0.95956 1.01635 1.02646 1.21193 0.93972 0.80589 1.02719 1.48900 1.56446 1.11346 1.03498 1.77346 1.38563 1.05385 1.02683 1.19446 0.90748 0.91882 0.91025 1.19803 1.44598 0.96322 0.92806 0.90308 1.27191 0.90116 1.05565 0.93879 1.70666 1.33703 1.02603 1.39366 0.82802 0.79742 0.71924 0.71810 1.24063 1.19167 1.20939 1.21090 1.20136 0.96266 0.96297 1.18816 1.03375 0.91004 0.79252 1.84803 1.37344 1.84653 1.21505 0.93045 0.91699 0.91667 0.90637 0.89954 0.90995 0.85442 0.76494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.15 0.38 -1.98 14 2 C 0.14 2.35 7.11 -4.04 -0.03 2.32 14 3 N -0.41 -9.25 3.64 -61.37 -0.22 -9.47 14 4 N -0.40 -10.78 7.84 32.25 0.25 -10.53 14 5 C 0.22 6.02 6.50 -84.87 -0.55 5.47 14 6 C -0.50 -14.39 9.83 -37.79 -0.37 -14.76 14 7 H 0.08 2.29 8.05 -52.49 -0.42 1.87 14 8 C 0.05 1.46 5.51 -17.35 -0.10 1.37 14 9 N -0.84 -24.25 13.66 55.54 0.76 -23.49 14 10 Si 1.11 28.53 25.88 -169.99 -4.40 24.13 14 11 H -0.31 -7.76 7.11 56.52 0.40 -7.36 14 12 H -0.27 -6.80 6.75 56.52 0.38 -6.42 14 13 H -0.28 -7.34 7.11 56.52 0.40 -6.94 14 14 C -0.31 -7.50 10.78 -39.30 -0.42 -7.92 14 15 C 0.24 5.28 7.96 -16.64 -0.13 5.14 14 16 O -0.48 -8.33 13.57 -18.87 -0.26 -8.59 14 17 H 0.05 0.69 8.14 -51.93 -0.42 0.27 14 18 H 0.06 0.71 8.14 -51.93 -0.42 0.29 14 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 14 20 H 0.08 1.11 8.14 -51.93 -0.42 0.69 14 21 H 0.08 1.37 8.14 -51.92 -0.42 0.95 14 22 H 0.28 7.79 8.72 -40.82 -0.36 7.43 14 23 H 0.13 2.89 8.06 -52.49 -0.42 2.47 14 24 H 0.38 4.55 9.06 45.56 0.41 4.96 14 LS Contribution 218.10 15.07 3.29 3.29 Total: -1.00 -32.65 218.10 -3.52 -36.17 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -1.72 Total: -1.15 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.22 Total: -10.36 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.79 Total: -43.50 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.26 Total: -8.59 kcal Atomic # 14 Polarization: 28.53 SS G_CDS: -4.40 Total: 24.13 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -32.65 -3.52 -36.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224834.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.473 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds