Wall clock time and date at job start Mon Mar 30 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47606 * 2 1 4 4 N 1.40060 * 125.89652 * 90.01724 * 3 2 1 5 5 C 1.32906 * 108.07498 * 179.97438 * 4 3 2 6 6 C 1.41399 * 126.08325 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99831 * 186.13279 * 6 5 4 8 8 C 1.39827 * 120.00453 * 6.13296 * 6 5 4 9 9 N 1.30901 * 120.00103 * 184.00451 * 8 6 5 10 10 Si 1.86801 * 119.99664 * 4.00524 * 8 6 5 11 11 H 1.48506 * 109.46880 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.47162 * 299.99903 * 10 8 6 13 13 H 1.48506 * 109.47182 * 60.00110 * 10 8 6 14 14 C 1.41728 * 107.83044 * 0.24472 * 5 4 3 15 15 C 1.35294 * 107.82327 * 359.59983 * 14 5 4 16 16 O 1.35723 * 125.96867 * 180.14635 * 15 14 5 17 17 H 1.09002 * 109.47194 * 59.99884 * 1 2 3 18 18 H 1.09000 * 109.47704 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47084 * 300.00098 * 1 2 3 20 20 H 1.09001 * 109.46951 * 239.99363 * 2 1 3 21 21 H 1.09008 * 109.47136 * 119.99678 * 2 1 3 22 22 H 0.97001 * 120.00563 * 354.83213 * 9 8 6 23 23 H 1.07991 * 126.08632 * 179.73791 * 14 5 4 24 24 H 0.96703 * 113.99908 * 270.29709 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2925 2.1553 1.1346 5 6 2.7148 3.3480 0.7278 6 6 3.0957 4.4252 1.5609 7 1 3.3300 5.3863 1.1275 8 6 3.1690 4.2462 2.9457 9 7 3.4450 5.2624 3.7233 10 14 2.8731 2.5569 3.6860 11 1 3.0069 2.6334 5.1630 12 1 1.5054 2.0959 3.3366 13 1 3.8713 1.5985 3.1470 14 6 2.7094 3.3502 -0.6894 15 6 2.2848 2.1342 -1.1038 16 8 2.1437 1.7360 -2.3936 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8932 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 3.6722 6.1221 3.3358 23 1 2.9955 4.1748 -1.3254 24 1 1.2701 1.9155 -2.7673 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261224834.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:18 Heat of formation + Delta-G solvation = -11.427798 kcal Electronic energy + Delta-G solvation = -10883.542167 eV Core-core repulsion = 8797.287316 eV Total energy + Delta-G solvation = -2086.254850 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.57366 -38.02283 -35.89249 -34.65358 -30.93219 -29.68216 -27.34070 -23.99907 -22.04239 -21.37688 -20.01149 -18.39907 -17.40268 -16.11449 -15.65281 -15.44480 -14.98637 -14.59505 -14.20277 -14.07264 -13.45976 -13.08654 -12.55054 -12.43214 -12.19601 -12.00939 -11.55493 -11.19176 -10.34312 -9.93948 -9.26086 -9.21425 -6.67072 1.01576 1.41359 1.50722 1.75543 2.12937 2.16401 2.48055 3.26063 3.33544 3.86721 4.21347 4.40174 4.48142 4.77220 4.93493 5.02460 5.11852 5.22600 5.40901 5.60284 6.04706 6.19172 6.44662 6.80294 6.99469 7.36858 8.14884 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.050200 B = 0.016481 C = 0.013033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.637528 B = 1698.524283 C = 2147.895031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 N -0.407 5.407 4 N -0.422 5.422 5 C 0.197 3.803 6 C -0.523 4.523 7 H 0.060 0.940 8 C 0.018 3.982 9 N -0.859 5.859 10 Si 1.146 2.854 11 H -0.300 1.300 12 H -0.265 1.265 13 H -0.287 1.287 14 C -0.344 4.344 15 C 0.274 3.726 16 O -0.468 6.468 17 H 0.060 0.940 18 H 0.104 0.896 19 H 0.038 0.962 20 H 0.107 0.893 21 H 0.083 0.917 22 H 0.276 0.724 23 H 0.135 0.865 24 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -10.164 -8.191 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 N -0.199 5.199 4 N -0.258 5.258 5 C 0.047 3.953 6 C -0.563 4.563 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.487 5.487 10 Si 0.973 3.027 11 H -0.230 1.230 12 H -0.191 1.191 13 H -0.214 1.214 14 C -0.376 4.376 15 C 0.105 3.895 16 O -0.274 6.274 17 H 0.079 0.921 18 H 0.123 0.877 19 H 0.058 0.942 20 H 0.125 0.875 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.153 0.847 24 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.730 -11.961 -5.914 14.522 hybrid contribution 0.062 2.167 -2.349 3.196 sum -5.668 -9.794 -8.263 14.012 Atomic orbital electron populations 1.22110 0.93528 1.04019 1.01834 1.21756 0.95955 0.77722 1.04412 1.49312 1.55071 1.12875 1.02667 1.77180 1.37903 1.05460 1.05213 1.19506 0.91297 0.91959 0.92569 1.19836 1.46412 0.96503 0.93548 0.92183 1.28050 0.89820 1.07342 0.94289 1.70695 1.35746 1.02803 1.39433 0.82288 0.79319 0.69274 0.71790 1.22967 1.19133 1.21425 1.21204 1.22855 0.98336 0.95180 1.18580 1.00503 0.89640 0.80758 1.84749 1.39902 1.84085 1.18704 0.92064 0.87728 0.94250 0.87469 0.89819 0.91400 0.84736 0.72834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.05 14 2 C 0.12 3.64 7.11 86.38 0.61 4.25 14 3 N -0.41 -17.19 3.64 -458.81 -1.67 -18.86 14 4 N -0.42 -22.06 7.84 -51.88 -0.41 -22.47 14 5 C 0.20 10.94 6.50 40.62 0.26 11.21 14 6 C -0.52 -31.34 9.83 23.43 0.23 -31.11 14 7 H 0.06 3.68 8.05 -2.91 -0.02 3.65 14 8 C 0.02 1.08 5.51 85.22 0.47 1.55 14 9 N -0.86 -51.02 13.66 21.81 0.30 -50.73 14 10 Si 1.15 58.33 25.88 68.60 1.78 60.10 14 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 14 12 H -0.27 -13.30 6.75 99.48 0.67 -12.62 14 13 H -0.29 -14.64 7.11 99.48 0.71 -13.93 14 14 C -0.34 -16.60 10.78 22.45 0.24 -16.36 14 15 C 0.27 11.15 7.96 83.33 0.66 11.82 14 16 O -0.47 -14.02 13.57 -90.45 -1.23 -15.24 14 17 H 0.06 1.36 8.14 -2.39 -0.02 1.34 14 18 H 0.10 1.73 8.14 -2.39 -0.02 1.71 14 19 H 0.04 1.16 8.14 -2.39 -0.02 1.14 14 20 H 0.11 2.57 8.14 -2.39 -0.02 2.55 14 21 H 0.08 2.50 8.14 -2.38 -0.02 2.48 14 22 H 0.28 15.97 8.72 -92.71 -0.81 15.16 14 23 H 0.13 6.08 8.06 -2.92 -0.02 6.05 14 24 H 0.41 7.57 9.06 -74.06 -0.67 6.90 14 Total: -1.00 -70.74 218.10 2.45 -68.29 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 0.46 Total: 0.59 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.22 Total: -21.69 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -1.78 Total: -92.06 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.23 Total: -15.24 kcal Atomic # 14 Polarization: 58.33 SS G_CDS: 1.78 Total: 60.10 kcal Total: -70.74 2.45 -68.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224834.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.863 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds