Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40120 * 126.16543 * 2 1 4 4 H 0.97000 * 125.91238 * 0.02865 * 3 2 1 5 5 C 1.36600 * 108.18334 * 180.25559 * 3 2 1 6 6 C 1.34822 * 108.44891 * 359.77841 * 5 3 2 7 7 C 1.50699 * 125.96121 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47524 * 95.03981 * 7 6 5 9 9 H 1.08006 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00651 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00304 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99577 * 0.02562 * 10 8 7 13 13 H 1.48490 * 109.46992 * 90.00315 * 12 10 8 14 14 H 1.48505 * 109.46902 * 210.00210 * 12 10 8 15 15 H 1.48499 * 109.46925 * 330.00073 * 12 10 8 16 16 C 1.34872 * 126.16824 * 179.87294 * 2 1 3 17 17 O 1.21783 * 126.18909 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.47449 * 270.12871 * 1 2 3 19 19 H 1.09006 * 109.46897 * 30.13047 * 1 2 3 20 20 H 1.09003 * 109.47060 * 150.12730 * 1 2 3 21 21 H 1.08001 * 125.77906 * 179.80228 * 5 3 2 22 22 H 1.09003 * 109.47456 * 215.04523 * 7 6 5 23 23 H 1.08999 * 109.47007 * 335.04175 * 7 6 5 24 24 H 0.96993 * 119.99864 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2918 1.1312 0.0000 4 1 1.9933 2.0541 0.0004 5 6 3.5911 0.7095 -0.0058 6 6 3.6021 -0.6387 -0.0044 7 6 4.8290 -1.5137 -0.0099 8 6 5.1730 -1.9055 1.4039 9 1 4.5638 -1.5562 2.2245 10 6 6.2655 -2.7099 1.6501 11 7 6.5653 -3.0522 2.8840 12 14 7.3196 -3.3134 0.2309 13 1 8.4087 -2.3375 -0.0267 14 1 7.9083 -4.6321 0.5774 15 1 6.4797 -3.4507 -0.9860 16 6 2.2609 -1.0888 0.0024 17 8 1.8918 -2.2494 0.0045 18 1 -0.3634 0.0023 1.0277 19 1 -0.3633 0.8889 -0.5159 20 1 -0.3633 -0.8911 -0.5119 21 1 4.4622 1.3480 -0.0103 22 1 4.6333 -2.4103 -0.5981 23 1 5.6635 -0.9665 -0.4485 24 1 7.3340 -3.6178 3.0572 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261238025.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = 46.217979 kcal Electronic energy + Delta-G solvation = -10704.301817 eV Core-core repulsion = 8620.546676 eV Total energy + Delta-G solvation = -2083.755142 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.84921 -36.29018 -33.78028 -32.30803 -30.45526 -27.81358 -26.21192 -22.53110 -20.70895 -19.46733 -17.50250 -16.61140 -15.43887 -15.14522 -14.39632 -14.03187 -13.33089 -12.91441 -12.72558 -12.47885 -11.79371 -11.73994 -11.45819 -10.51190 -10.20437 -9.91837 -9.24205 -9.02391 -8.56282 -8.38395 -6.99358 -5.88202 -3.83897 2.17773 2.31114 3.41490 3.49741 3.56554 4.05230 4.28393 4.59591 5.06162 5.35391 5.40296 5.47173 5.60192 6.07676 6.38535 6.52015 7.05518 7.23948 7.49721 7.76593 7.91427 8.08492 8.72646 8.96479 9.18357 9.73742 11.25705 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067114 B = 0.011466 C = 0.011165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.097587 B = 2441.401599 C = 2507.325523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.435 5.435 3 N -0.518 5.518 4 H 0.432 0.568 5 C 0.119 3.881 6 C -0.242 4.242 7 C 0.061 3.939 8 C -0.500 4.500 9 H 0.069 0.931 10 C 0.064 3.936 11 N -0.908 5.908 12 Si 0.878 3.122 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.263 1.263 16 C 0.534 3.466 17 O -0.545 6.545 18 H 0.060 0.940 19 H 0.070 0.930 20 H 0.090 0.910 21 H 0.184 0.816 22 H 0.028 0.972 23 H 0.021 0.979 24 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 11.090 -7.357 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.261 5.261 3 N -0.243 5.243 4 H 0.276 0.724 5 C -0.011 4.011 6 C -0.255 4.255 7 C 0.023 3.977 8 C -0.539 4.539 9 H 0.087 0.913 10 C -0.136 4.136 11 N -0.547 5.547 12 Si 0.705 3.295 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.188 1.188 16 C 0.331 3.669 17 O -0.423 6.423 18 H 0.079 0.921 19 H 0.089 0.911 20 H 0.109 0.891 21 H 0.201 0.799 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.571 10.332 -7.252 15.257 hybrid contribution 0.368 0.269 -0.447 0.639 sum -8.202 10.601 -7.699 15.457 Atomic orbital electron populations 1.21664 0.75774 1.03542 1.02377 1.48312 1.03449 0.99859 1.74455 1.43637 1.01298 1.01024 1.78375 0.72392 1.22199 0.84874 0.96083 0.97966 1.20909 0.96205 0.93767 1.14638 1.17984 0.88209 0.93452 0.98082 1.21047 1.11362 1.30077 0.91393 0.91298 1.25000 0.97436 0.95758 0.95438 1.69914 1.28224 1.37504 1.19102 0.86795 0.80662 0.78299 0.83709 1.20389 1.21461 1.18789 1.17145 0.87137 0.83483 0.79091 1.90811 1.80341 1.16099 1.55030 0.92135 0.91146 0.89109 0.79907 0.95335 0.96123 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.40 59.84 0.68 1.96 14 2 N -0.44 -7.31 4.02 -70.06 -0.28 -7.59 14 3 N -0.52 -6.96 7.29 30.67 0.22 -6.73 14 4 H 0.43 3.67 8.96 -182.58 -1.64 2.03 14 5 C 0.12 1.92 11.88 -16.64 -0.20 1.72 14 6 C -0.24 -5.39 5.32 -104.60 -0.56 -5.95 14 7 C 0.06 1.57 4.50 -29.04 -0.13 1.44 14 8 C -0.50 -15.15 9.65 -34.44 -0.33 -15.48 14 9 H 0.07 2.28 7.98 -52.48 -0.42 1.86 14 10 C 0.06 1.94 5.47 -17.82 -0.10 1.85 14 11 N -0.91 -29.16 13.96 55.43 0.77 -28.39 14 12 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 14 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 14 15 H -0.26 -6.59 6.54 56.52 0.37 -6.22 14 16 C 0.53 12.19 7.91 -14.99 -0.12 12.07 14 17 O -0.55 -14.62 17.84 5.11 0.09 -14.53 14 18 H 0.06 0.67 8.14 -51.93 -0.42 0.25 14 19 H 0.07 0.56 8.14 -51.93 -0.42 0.14 14 20 H 0.09 1.11 8.09 -51.93 -0.42 0.69 14 21 H 0.18 2.25 8.06 -52.49 -0.42 1.83 14 22 H 0.03 0.78 7.20 -51.93 -0.37 0.41 14 23 H 0.02 0.49 7.57 -51.93 -0.39 0.09 14 24 H 0.26 7.82 8.31 -40.82 -0.34 7.48 14 LS Contribution 219.92 15.07 3.31 3.31 Total: -1.00 -38.30 219.92 -4.98 -43.28 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -3.68 Total: -4.79 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.75 Total: -2.40 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.72 Total: -42.71 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -38.30 -4.98 -43.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238025.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.493 kcal (2) G-P(sol) polarization free energy of solvation -38.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds