Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40120 * 126.16543 * 2 1 4 4 H 0.97000 * 125.91238 * 0.02865 * 3 2 1 5 5 C 1.36600 * 108.18334 * 180.25559 * 3 2 1 6 6 C 1.34822 * 108.44891 * 359.77841 * 5 3 2 7 7 C 1.50699 * 125.96121 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47524 * 95.03981 * 7 6 5 9 9 H 1.08006 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00651 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00304 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99577 * 0.02562 * 10 8 7 13 13 H 1.48490 * 109.46992 * 90.00315 * 12 10 8 14 14 H 1.48505 * 109.46902 * 210.00210 * 12 10 8 15 15 H 1.48499 * 109.46925 * 330.00073 * 12 10 8 16 16 C 1.34872 * 126.16824 * 179.87294 * 2 1 3 17 17 O 1.21783 * 126.18909 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.47449 * 270.12871 * 1 2 3 19 19 H 1.09006 * 109.46897 * 30.13047 * 1 2 3 20 20 H 1.09003 * 109.47060 * 150.12730 * 1 2 3 21 21 H 1.08001 * 125.77906 * 179.80228 * 5 3 2 22 22 H 1.09003 * 109.47456 * 215.04523 * 7 6 5 23 23 H 1.08999 * 109.47007 * 335.04175 * 7 6 5 24 24 H 0.96993 * 119.99864 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2918 1.1312 0.0000 4 1 1.9933 2.0541 0.0004 5 6 3.5911 0.7095 -0.0058 6 6 3.6021 -0.6387 -0.0044 7 6 4.8290 -1.5137 -0.0099 8 6 5.1730 -1.9055 1.4039 9 1 4.5638 -1.5562 2.2245 10 6 6.2655 -2.7099 1.6501 11 7 6.5653 -3.0522 2.8840 12 14 7.3196 -3.3134 0.2309 13 1 8.4087 -2.3375 -0.0267 14 1 7.9083 -4.6321 0.5774 15 1 6.4797 -3.4507 -0.9860 16 6 2.2609 -1.0888 0.0024 17 8 1.8918 -2.2494 0.0045 18 1 -0.3634 0.0023 1.0277 19 1 -0.3633 0.8889 -0.5159 20 1 -0.3633 -0.8911 -0.5119 21 1 4.4622 1.3480 -0.0103 22 1 4.6333 -2.4103 -0.5981 23 1 5.6635 -0.9665 -0.4485 24 1 7.3340 -3.6178 3.0572 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261238025.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = 15.018215 kcal Electronic energy + Delta-G solvation = -10705.654741 eV Core-core repulsion = 8620.546676 eV Total energy + Delta-G solvation = -2085.108065 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.31640 -37.93879 -35.58888 -34.12309 -32.18775 -29.52250 -27.59679 -24.51180 -22.17423 -21.02564 -18.89677 -18.87939 -16.88089 -16.68212 -16.16389 -15.80572 -14.89831 -14.71743 -14.15250 -13.78848 -13.50689 -13.39082 -13.20732 -12.44968 -12.19072 -11.85928 -11.53162 -10.77368 -10.62383 -9.98203 -8.55505 -8.20576 -6.22701 0.86120 0.95402 1.39066 1.44984 1.58100 2.40664 2.44444 3.02787 3.14181 4.07090 4.29502 4.42586 4.65114 4.70641 4.88878 5.08822 5.21829 5.42901 5.57001 5.74554 6.33472 6.39983 6.79728 6.90192 7.38137 7.42138 8.96844 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067114 B = 0.011466 C = 0.011165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.097587 B = 2441.401599 C = 2507.325523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.431 5.431 3 N -0.475 5.475 4 H 0.463 0.537 5 C 0.182 3.818 6 C -0.329 4.329 7 C 0.072 3.928 8 C -0.510 4.510 9 H 0.018 0.982 10 C -0.003 4.003 11 N -0.958 5.958 12 Si 0.956 3.044 13 H -0.248 1.248 14 H -0.288 1.288 15 H -0.257 1.257 16 C 0.504 3.496 17 O -0.616 6.616 18 H 0.070 0.930 19 H 0.122 0.878 20 H 0.080 0.920 21 H 0.236 0.764 22 H -0.001 1.001 23 H 0.048 0.952 24 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 14.076 -9.107 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.253 5.253 3 N -0.200 5.200 4 H 0.314 0.686 5 C 0.046 3.954 6 C -0.341 4.341 7 C 0.034 3.966 8 C -0.548 4.548 9 H 0.037 0.963 10 C -0.198 4.198 11 N -0.599 5.599 12 Si 0.778 3.222 13 H -0.172 1.172 14 H -0.214 1.214 15 H -0.181 1.181 16 C 0.304 3.696 17 O -0.500 6.500 18 H 0.089 0.911 19 H 0.140 0.860 20 H 0.099 0.901 21 H 0.252 0.748 22 H 0.017 0.983 23 H 0.066 0.934 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.490 13.443 -9.008 18.274 hybrid contribution 0.178 -0.442 0.173 0.507 sum -8.312 13.001 -8.835 17.781 Atomic orbital electron populations 1.22058 0.72623 1.05619 1.03766 1.48326 1.05115 0.99641 1.72250 1.43844 1.00354 1.01665 1.74185 0.68637 1.22793 0.86859 0.94363 0.91381 1.20609 0.94989 0.96172 1.22353 1.17692 0.91029 0.93538 0.94358 1.21374 1.10531 1.30096 0.92812 0.96342 1.26067 0.99197 0.95854 0.98674 1.70087 1.29317 1.38717 1.21824 0.85583 0.78955 0.78125 0.79505 1.17233 1.21378 1.18115 1.17359 0.88415 0.83828 0.80025 1.90734 1.81488 1.18800 1.59023 0.91104 0.86012 0.90131 0.74761 0.98282 0.93367 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.08 11.40 127.77 1.46 3.53 14 2 N -0.43 -13.53 4.02 -493.69 -1.98 -15.52 14 3 N -0.47 -10.46 7.29 -56.89 -0.42 -10.87 14 4 H 0.46 4.75 8.96 -213.31 -1.91 2.84 14 5 C 0.18 5.13 11.88 83.17 0.99 6.12 14 6 C -0.33 -14.48 5.32 -19.85 -0.11 -14.58 14 7 C 0.07 3.76 4.50 29.10 0.13 3.89 14 8 C -0.51 -32.02 9.65 25.60 0.25 -31.77 14 9 H 0.02 1.29 7.98 -2.91 -0.02 1.26 14 10 C 0.00 -0.17 5.47 84.65 0.46 0.30 14 11 N -0.96 -63.59 13.96 21.45 0.30 -63.29 14 12 Si 0.96 46.93 27.47 68.60 1.88 48.81 14 13 H -0.25 -10.96 7.11 99.48 0.71 -10.26 14 14 H -0.29 -13.97 7.11 99.48 0.71 -13.26 14 15 H -0.26 -12.27 6.54 99.48 0.65 -11.62 14 16 C 0.50 23.45 7.91 85.02 0.67 24.13 14 17 O -0.62 -35.11 17.84 -4.61 -0.08 -35.19 14 18 H 0.07 1.39 8.14 -2.39 -0.02 1.37 14 19 H 0.12 1.32 8.14 -2.38 -0.02 1.30 14 20 H 0.08 1.92 8.09 -2.39 -0.02 1.90 14 21 H 0.24 4.19 8.06 -2.91 -0.02 4.17 14 22 H 0.00 -0.06 7.20 -2.39 -0.02 -0.08 14 23 H 0.05 2.18 7.57 -2.39 -0.02 2.16 14 24 H 0.26 16.29 8.31 -92.71 -0.77 15.52 14 Total: -1.00 -91.94 219.92 2.80 -89.15 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: -0.76 Total: -4.70 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 3.85 Total: -8.40 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.10 Total: -89.67 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.08 Total: -35.19 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.81 kcal Total: -91.94 2.80 -89.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238025.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.165 kcal (2) G-P(sol) polarization free energy of solvation -91.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds