Wall clock time and date at job start Mon Mar 30 2020 01:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35754 * 116.99767 * 2 1 4 4 N 1.35127 * 126.19693 * 359.68483 * 3 2 1 5 5 H 0.97003 * 126.03980 * 0.02562 * 4 3 2 6 6 N 1.40073 * 107.92959 * 179.85015 * 4 3 2 7 7 C 1.30830 * 108.34240 * 0.42124 * 6 4 3 8 8 C 1.35946 * 126.18939 * 179.97438 * 3 2 1 9 9 C 1.50699 * 126.08591 * 0.02562 * 8 3 2 10 10 C 1.50700 * 109.47363 * 84.99670 * 9 8 3 11 11 H 1.07992 * 120.00137 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99814 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99995 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99586 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47168 * 90.00206 * 14 12 10 16 16 H 1.48497 * 109.46623 * 210.00036 * 14 12 10 17 17 H 1.48494 * 109.47314 * 329.99813 * 14 12 10 18 18 H 1.09002 * 109.47382 * 300.00330 * 1 2 3 19 19 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46926 * 60.00437 * 1 2 3 21 21 H 1.07998 * 125.86241 * 179.74258 * 7 6 4 22 22 H 1.09001 * 109.47343 * 205.00076 * 9 8 3 23 23 H 1.09001 * 109.46789 * 324.99585 * 9 8 3 24 24 H 0.96998 * 119.99953 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.4359 2.4157 -0.0060 5 1 0.4785 2.5713 -0.0107 6 7 2.4309 3.4015 -0.0001 7 6 3.5975 2.8092 0.0000 8 6 3.3873 1.4268 0.0005 9 6 4.4581 0.3663 0.0006 10 6 4.7283 -0.0749 -1.4148 11 1 4.1799 0.3685 -2.2327 12 6 5.6757 -1.0447 -1.6656 13 7 6.3432 -1.5850 -0.6696 14 14 6.0112 -1.5911 -3.4201 15 1 7.0821 -0.7454 -4.0057 16 1 6.4454 -3.0112 -3.4218 17 1 4.7728 -1.4512 -4.2275 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 4.5579 3.3031 0.0000 22 1 5.3715 0.7723 0.4353 23 1 4.1236 -0.4875 0.5898 24 1 7.0095 -2.2676 -0.8459 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272171.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:38 Heat of formation + Delta-G solvation = 33.823521 kcal Electronic energy + Delta-G solvation = -10689.291898 eV Core-core repulsion = 8604.999292 eV Total energy + Delta-G solvation = -2084.292606 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.75407 -37.62387 -33.29021 -31.16183 -29.86800 -27.55150 -25.91713 -22.74768 -21.16105 -19.68384 -17.99372 -16.21692 -15.58834 -14.99828 -14.66425 -14.26060 -13.55214 -13.05734 -12.29550 -12.02302 -11.62850 -11.17575 -11.08907 -10.73532 -10.56311 -10.00999 -9.47298 -9.30640 -8.74569 -8.25440 -7.20413 -5.86537 -3.88339 2.52959 3.15226 3.39408 3.44746 3.48542 3.63640 3.68996 4.58134 5.03307 5.14677 5.41023 5.47675 5.48905 6.19715 6.29668 6.81972 6.90628 7.45692 7.75668 7.90215 8.09968 8.14717 8.31369 8.56246 9.15907 9.73649 11.22832 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.046968 B = 0.012453 C = 0.011232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.008171 B = 2247.988544 C = 2492.175700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.278 6.278 3 C 0.249 3.751 4 N -0.519 5.519 5 H 0.425 0.575 6 N -0.312 5.312 7 C 0.074 3.926 8 C -0.201 4.201 9 C 0.091 3.909 10 C -0.500 4.500 11 H 0.052 0.948 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 H 0.048 0.952 19 H 0.104 0.896 20 H 0.049 0.951 21 H 0.184 0.816 22 H 0.027 0.973 23 H 0.025 0.975 24 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 4.174 1.345 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.183 6.183 3 C 0.082 3.918 4 N -0.241 5.241 5 H 0.267 0.733 6 N -0.139 5.139 7 C -0.111 4.111 8 C -0.212 4.212 9 C 0.053 3.947 10 C -0.539 4.539 11 H 0.070 0.930 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.201 1.201 18 H 0.067 0.933 19 H 0.123 0.877 20 H 0.068 0.932 21 H 0.201 0.799 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.234 4.803 1.382 11.389 hybrid contribution -0.216 -1.003 -1.043 1.463 sum -10.450 3.800 0.339 11.125 Atomic orbital electron populations 1.23002 0.79685 1.04580 1.00398 1.86450 1.19817 1.22202 1.89879 1.19430 0.91664 0.78324 1.02398 1.46451 1.08674 1.03517 1.65407 0.73311 1.77225 0.96221 1.11435 1.29057 1.23607 0.96503 0.92734 0.98232 1.20051 0.91241 0.95896 1.14024 1.17575 0.89879 0.90216 0.97010 1.21171 1.19850 1.20336 0.92541 0.92969 1.24985 0.96225 0.96473 0.96776 1.69956 1.25341 1.27968 1.30554 0.86614 0.78402 0.77731 0.85365 1.20748 1.21348 1.20099 0.93347 0.87713 0.93222 0.79928 0.95483 0.95634 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.31 101.05 1.04 1.28 14 2 O -0.28 -5.39 10.52 -18.97 -0.20 -5.59 14 3 C 0.25 5.10 7.76 -16.92 -0.13 4.97 14 4 N -0.52 -9.01 7.12 30.36 0.22 -8.79 14 5 H 0.42 5.57 8.31 -182.61 -1.52 4.05 14 6 N -0.31 -5.97 12.69 30.61 0.39 -5.58 14 7 C 0.07 1.50 11.96 -17.38 -0.21 1.29 14 8 C -0.20 -4.63 5.31 -104.85 -0.56 -5.19 14 9 C 0.09 2.46 5.43 -29.04 -0.16 2.30 14 10 C -0.50 -14.59 9.09 -34.44 -0.31 -14.90 14 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 14 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 14 13 N -0.90 -27.26 13.29 55.43 0.74 -26.53 14 14 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 14 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 14 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 14 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 18 H 0.05 0.50 8.14 -51.93 -0.42 0.07 14 19 H 0.10 1.08 8.14 -51.93 -0.42 0.65 14 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 14 21 H 0.18 3.18 8.06 -52.49 -0.42 2.76 14 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 14 23 H 0.03 0.74 8.14 -51.93 -0.42 0.31 14 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 14 LS Contribution 222.92 15.07 3.36 3.36 Total: -1.00 -33.19 222.92 -4.54 -37.73 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.59 Total: -3.03 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.42 Total: -8.71 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.34 Total: -40.90 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -33.19 -4.54 -37.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272171.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.553 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds