Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40074 * 126.03326 * 2 1 4 4 C 1.30836 * 108.33940 * 179.76070 * 3 2 1 5 5 C 1.39817 * 108.27945 * 0.40306 * 4 3 2 6 6 C 1.50700 * 126.07690 * 179.85887 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.68438 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 C 1.35135 * 126.04250 * 180.02562 * 2 1 3 16 16 O 1.35757 * 126.18632 * 359.96007 * 15 2 1 17 17 H 1.09001 * 109.47620 * 269.97705 * 1 2 3 18 18 H 1.08999 * 109.47252 * 29.97869 * 1 2 3 19 19 H 1.09004 * 109.46635 * 149.98021 * 1 2 3 20 20 H 1.07997 * 125.85367 * 180.23285 * 4 3 2 21 21 H 1.09004 * 109.47210 * 144.68731 * 6 5 4 22 22 H 1.08994 * 109.47551 * 24.68384 * 6 5 4 23 23 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 24 24 H 0.96695 * 114.00137 * 270.02094 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1327 0.0000 4 6 3.5354 0.7351 0.0052 5 6 3.5497 -0.6630 -0.0007 6 6 4.7768 -1.5379 -0.0006 7 6 5.1136 -1.9307 -1.4160 8 1 4.5008 -1.5814 -2.2338 9 6 6.2079 -2.7310 -1.6675 10 7 6.9544 -3.1560 -0.6717 11 14 6.6299 -3.2115 -3.4226 12 1 5.6417 -2.6081 -4.3523 13 1 7.9898 -2.7178 -3.7576 14 1 6.5942 -4.6904 -3.5532 15 6 2.2601 -1.0927 -0.0005 16 8 1.8457 -2.3855 -0.0003 17 1 -0.3634 -0.0004 1.0276 18 1 -0.3634 0.8902 -0.5135 19 1 -0.3633 -0.8899 -0.5142 20 1 4.4041 1.3768 0.0101 21 1 4.5840 -2.4342 0.5891 22 1 5.6134 -0.9905 0.4334 23 1 7.7241 -3.7193 -0.8486 24 1 1.7259 -2.7599 0.8831 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286618.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = 32.735638 kcal Electronic energy + Delta-G solvation = -10669.643012 eV Core-core repulsion = 8585.303232 eV Total energy + Delta-G solvation = -2084.339780 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.64038 -36.56266 -33.64759 -32.36966 -29.90841 -27.29307 -25.57006 -22.66334 -20.60812 -19.79398 -17.49349 -16.30796 -15.67756 -14.78107 -14.44549 -13.87468 -13.28755 -12.71562 -12.41872 -12.28668 -11.88175 -11.29256 -11.16150 -10.69584 -10.53794 -9.82280 -9.48718 -9.31818 -8.66416 -8.30929 -7.41207 -5.92413 -3.93914 2.31552 2.90154 3.36355 3.42704 3.47091 3.55688 4.54584 4.64407 4.99524 5.33704 5.41744 5.56866 5.67502 6.28783 6.35544 6.80573 7.11565 7.35047 7.66612 7.79557 8.04010 8.16897 8.31279 8.49671 9.10398 9.68655 11.17151 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.061429 B = 0.011149 C = 0.010847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.703896 B = 2510.880113 C = 2580.808833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.398 5.398 3 N -0.300 5.300 4 C 0.054 3.946 5 C -0.186 4.186 6 C 0.089 3.911 7 C -0.499 4.499 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.229 3.771 16 O -0.457 6.457 17 H 0.064 0.936 18 H 0.082 0.918 19 H 0.081 0.919 20 H 0.182 0.818 21 H 0.023 0.977 22 H 0.028 0.972 23 H 0.259 0.741 24 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 3.576 2.857 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.194 5.194 3 N -0.126 5.126 4 C -0.131 4.131 5 C -0.198 4.198 6 C 0.051 3.949 7 C -0.538 4.538 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.063 3.937 16 O -0.258 6.258 17 H 0.082 0.918 18 H 0.101 0.899 19 H 0.100 0.900 20 H 0.199 0.801 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.593 4.393 2.269 11.690 hybrid contribution 0.647 -1.182 -0.487 1.433 sum -9.946 3.211 1.782 10.602 Atomic orbital electron populations 1.21624 0.75806 1.03894 1.02261 1.48785 1.06011 1.04094 1.60480 1.77259 1.02018 1.06446 1.26843 1.23615 0.94611 0.95080 0.99771 1.20775 0.94920 0.94538 1.09550 1.17629 0.87536 0.92486 0.97242 1.21172 1.10533 1.29681 0.92402 0.92809 1.24992 0.96333 0.96217 0.96984 1.69965 1.17442 1.35876 1.30577 0.86523 0.78121 0.78134 0.85165 1.19849 1.21062 1.21107 1.18512 0.88816 0.80075 1.06283 1.84927 1.88584 1.19573 1.32708 0.91781 0.89938 0.89999 0.80110 0.95851 0.95374 0.93127 0.76121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.34 11.42 59.85 0.68 2.03 14 2 N -0.40 -7.31 4.02 -68.28 -0.27 -7.59 14 3 N -0.30 -5.92 12.57 30.61 0.38 -5.54 14 4 C 0.05 1.09 11.96 -17.39 -0.21 0.89 14 5 C -0.19 -4.25 5.31 -104.86 -0.56 -4.81 14 6 C 0.09 2.35 5.43 -29.03 -0.16 2.19 14 7 C -0.50 -14.52 9.09 -34.44 -0.31 -14.83 14 8 H 0.05 1.60 7.74 -52.49 -0.41 1.19 14 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 14 10 N -0.90 -26.98 13.29 55.43 0.74 -26.24 14 11 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 14 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 14 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 14 14 H -0.28 -7.01 7.11 56.52 0.40 -6.60 14 15 C 0.23 4.71 7.92 -16.92 -0.13 4.58 14 16 O -0.46 -8.47 13.53 -18.98 -0.26 -8.72 14 17 H 0.06 0.66 8.14 -51.93 -0.42 0.24 14 18 H 0.08 0.94 8.14 -51.93 -0.42 0.51 14 19 H 0.08 0.94 8.14 -51.93 -0.42 0.51 14 20 H 0.18 3.20 8.06 -52.49 -0.42 2.78 14 21 H 0.02 0.64 8.14 -51.93 -0.42 0.22 14 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 14 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 14 24 H 0.38 5.01 9.06 45.56 0.41 5.42 14 LS Contribution 224.72 15.07 3.39 3.39 Total: -1.00 -33.80 224.72 -3.49 -37.29 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -1.66 Total: -1.34 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.78 Total: -8.46 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.85 Total: -39.36 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.26 Total: -8.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -33.80 -3.49 -37.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286618.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.024 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds