Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46911 * 2 1 4 4 N 1.46907 * 109.47084 * 119.99267 * 2 1 3 5 5 C 1.50693 * 109.47452 * 239.99355 * 2 1 3 6 6 C 1.35946 * 126.00921 * 125.02541 * 5 2 1 7 7 O 1.34591 * 107.35772 * 180.02562 * 6 5 2 8 8 C 1.34946 * 107.61000 * 359.97438 * 7 6 5 9 9 C 1.39806 * 125.79746 * 180.26063 * 8 7 6 10 10 H 1.08003 * 119.99881 * 179.68741 * 9 8 7 11 11 C 1.40340 * 120.00235 * 359.69920 * 9 8 7 12 12 N 1.30628 * 119.99673 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00103 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47187 * 59.99669 * 13 11 9 15 15 H 1.48497 * 109.47039 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47280 * 299.99513 * 13 11 9 17 17 N 1.32814 * 108.40309 * 0.02562 * 8 7 6 18 18 H 1.08999 * 109.47277 * 300.00444 * 1 2 3 19 19 H 1.09001 * 109.46515 * 60.00210 * 1 2 3 20 20 H 1.08994 * 109.47149 * 180.02562 * 1 2 3 21 21 H 1.00895 * 110.99793 * 176.04498 * 4 2 1 22 22 H 1.00899 * 110.99972 * 300.00659 * 4 2 1 23 23 H 1.07998 * 126.31657 * 359.97438 * 6 5 2 24 24 H 0.97003 * 119.99792 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0324 -0.7105 -1.2303 6 6 2.8939 -0.2023 -2.1510 7 8 3.0857 -1.1497 -3.0874 8 6 2.3476 -2.2242 -2.7383 9 6 2.2707 -3.4280 -3.4449 10 1 1.6513 -4.2322 -3.0759 11 6 2.9986 -3.5917 -4.6336 12 7 3.7475 -2.6190 -5.0801 13 14 2.8964 -5.2005 -5.5773 14 1 1.4891 -5.4490 -5.9812 15 1 3.7514 -5.1190 -6.7887 16 1 3.3669 -6.3123 -4.7128 17 7 1.7107 -1.9455 -1.6067 18 1 -0.3634 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 3.0262 -0.7625 1.1910 22 1 1.6961 -0.2348 2.0386 23 1 3.3411 0.7807 -2.1344 24 1 4.2503 -2.7320 -5.9019 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316456.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = -26.809874 kcal Electronic energy + Delta-G solvation = -10727.375525 eV Core-core repulsion = 8640.453658 eV Total energy + Delta-G solvation = -2086.921867 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.97083 -37.17469 -35.63491 -34.02892 -31.07254 -29.67792 -27.64785 -23.89266 -22.72704 -20.89761 -19.27586 -17.37363 -16.81963 -16.64134 -16.23425 -15.92184 -15.19602 -14.58033 -14.10874 -13.29809 -12.98504 -12.92227 -12.82459 -12.60917 -12.22917 -11.98523 -11.49106 -11.17308 -10.51797 -9.54645 -9.42442 -8.82514 -6.72092 1.12027 1.39238 1.55578 1.57752 2.18123 2.23354 3.00058 3.22543 3.72788 3.86287 4.18726 4.44027 4.73925 4.82423 4.93003 5.05577 5.10040 5.40121 5.77465 5.92754 6.14933 6.30051 6.55167 6.64250 6.75185 7.87492 8.22576 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.082777 B = 0.010905 C = 0.010277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.177590 B = 2566.982024 C = 2723.920261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.177 3.823 3 H 0.062 0.938 4 N -0.844 5.844 5 C 0.015 3.985 6 C -0.240 4.240 7 O -0.213 6.213 8 C 0.306 3.694 9 C -0.465 4.465 10 H 0.109 0.891 11 C 0.027 3.973 12 N -0.813 5.813 13 Si 1.015 2.985 14 H -0.253 1.253 15 H -0.260 1.260 16 H -0.254 1.254 17 N -0.614 5.614 18 H 0.084 0.916 19 H 0.050 0.950 20 H 0.041 0.959 21 H 0.341 0.659 22 H 0.354 0.646 23 H 0.206 0.794 24 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 2.767 3.457 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.065 3.935 3 H 0.080 0.920 4 N -0.377 5.377 5 C -0.111 4.111 6 C -0.314 4.314 7 O -0.105 6.105 8 C 0.121 3.879 9 C -0.499 4.499 10 H 0.127 0.873 11 C -0.192 4.192 12 N -0.441 5.441 13 Si 0.832 3.168 14 H -0.177 1.177 15 H -0.184 1.184 16 H -0.178 1.178 17 N -0.348 5.348 18 H 0.102 0.898 19 H 0.069 0.931 20 H 0.060 0.940 21 H 0.154 0.846 22 H 0.169 0.831 23 H 0.222 0.778 24 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.707 1.824 3.331 4.164 hybrid contribution 1.136 1.070 -0.576 1.663 sum -0.572 2.894 2.755 4.037 Atomic orbital electron populations 1.21615 0.93330 1.01663 1.01815 1.19522 0.95830 0.92933 0.85171 0.92037 1.58444 1.16416 1.59234 1.03583 1.21936 0.98255 0.92537 0.98395 1.24877 1.13014 0.97771 0.95687 1.84783 1.57982 1.22656 1.45113 1.22767 0.86629 0.88531 0.89932 1.18760 1.27984 0.96461 1.06738 0.87283 1.27221 0.91583 1.03196 0.97158 1.69768 1.19806 1.34378 1.20159 0.84772 0.80041 0.74910 0.77054 1.17728 1.18414 1.17766 1.70799 1.32692 1.16658 1.14665 0.89769 0.93072 0.93996 0.84620 0.83127 0.77762 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.45 71.98 0.68 -3.57 14 2 C 0.18 6.44 3.85 44.17 0.17 6.61 14 3 H 0.06 1.89 8.11 -2.38 -0.02 1.87 14 4 N -0.84 -27.74 9.24 -171.79 -1.59 -29.33 14 5 C 0.01 0.71 5.88 41.84 0.25 0.96 14 6 C -0.24 -12.12 12.11 67.29 0.81 -11.31 14 7 O -0.21 -12.78 9.06 -11.74 -0.11 -12.89 14 8 C 0.31 18.68 7.66 84.92 0.65 19.33 14 9 C -0.46 -26.82 9.45 23.16 0.22 -26.60 14 10 H 0.11 6.03 7.85 -2.91 -0.02 6.01 14 11 C 0.03 1.40 5.50 85.38 0.47 1.87 14 12 N -0.81 -44.23 11.98 21.89 0.26 -43.97 14 13 Si 1.01 38.05 29.56 68.60 2.03 40.08 14 14 H -0.25 -9.12 7.11 99.48 0.71 -8.41 14 15 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 16 H -0.25 -9.15 7.11 99.48 0.71 -8.45 14 17 N -0.61 -35.48 11.32 -297.40 -3.37 -38.85 14 18 H 0.08 2.12 8.14 -2.39 -0.02 2.10 14 19 H 0.05 1.72 8.14 -2.39 -0.02 1.70 14 20 H 0.04 1.65 8.14 -2.39 -0.02 1.63 14 21 H 0.34 11.05 8.98 -89.70 -0.81 10.25 14 22 H 0.35 8.67 9.04 -89.70 -0.81 7.86 14 23 H 0.21 8.33 8.06 -2.91 -0.02 8.30 14 24 H 0.30 14.27 8.29 -92.71 -0.77 13.50 14 Total: -1.00 -69.67 221.15 0.09 -69.58 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.39 Total: 28.08 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 3.25 Total: -12.70 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.69 Total: -112.15 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.11 Total: -12.89 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -69.67 0.09 -69.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316456.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.769 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds