Wall clock time and date at job start Mon Mar 30 2020 01:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47719 * 2 1 4 4 N 1.46896 * 109.47130 * 119.99886 * 2 1 3 5 5 C 1.50704 * 109.47519 * 239.99688 * 2 1 3 6 6 C 1.35935 * 126.31564 * 99.99651 * 5 2 1 7 7 N 1.33064 * 107.97946 * 179.97438 * 6 5 2 8 8 C 1.32817 * 108.64691 * 0.02562 * 7 6 5 9 9 C 1.39797 * 125.79690 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99686 * 180.02562 * 9 8 7 11 11 C 1.40339 * 120.00424 * 0.02562 * 9 8 7 12 12 N 1.30635 * 119.99548 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00273 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47046 * 60.00369 * 13 11 9 15 15 H 1.48499 * 109.47166 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47128 * 299.99975 * 13 11 9 17 17 O 1.34591 * 126.32232 * 279.98271 * 5 2 1 18 18 H 1.08993 * 109.47102 * 300.00299 * 1 2 3 19 19 H 1.09000 * 109.46466 * 60.00206 * 1 2 3 20 20 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 21 21 H 1.00904 * 111.00561 * 176.04915 * 4 2 1 22 22 H 1.00899 * 111.00216 * 300.00130 * 4 2 1 23 23 H 1.08001 * 126.01254 * 0.02562 * 6 5 2 24 24 H 0.96999 * 119.99549 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0325 -0.7105 -1.2304 6 6 2.4801 -0.1242 -2.3722 7 7 2.8332 -1.0887 -3.2181 8 6 2.6181 -2.2633 -2.6365 9 6 2.8657 -3.5155 -3.2066 10 1 2.6546 -4.4148 -2.6469 11 6 3.3884 -3.6041 -4.5060 12 7 3.6441 -2.5163 -5.1827 13 14 3.7185 -5.2774 -5.2679 14 1 2.4512 -6.0481 -5.3378 15 1 4.2659 -5.0987 -6.6367 16 1 4.7015 -6.0154 -4.4347 17 8 2.1210 -2.0425 -1.4016 18 1 -0.3633 0.5138 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.0262 -0.7625 1.1910 22 1 1.6961 -0.2349 2.0385 23 1 2.5396 0.9378 -2.5596 24 1 4.0050 -2.5776 -6.0809 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261318794.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:16 Heat of formation + Delta-G solvation = -19.661055 kcal Electronic energy + Delta-G solvation = -10728.247028 eV Core-core repulsion = 8641.635157 eV Total energy + Delta-G solvation = -2086.611871 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.97854 -36.82887 -35.68657 -34.41067 -31.02817 -29.79476 -27.42439 -23.52356 -22.86018 -21.03010 -19.38909 -17.55049 -16.94788 -16.65216 -16.09474 -15.83650 -15.02803 -14.64502 -13.75366 -13.47389 -12.98543 -12.87716 -12.76667 -12.65906 -12.37995 -12.00388 -11.61585 -11.10828 -10.21193 -9.63767 -9.31814 -8.59226 -6.64839 1.10806 1.40418 1.56785 1.59295 2.18128 2.44756 2.82510 3.30097 3.63606 4.10684 4.27582 4.40369 4.51613 4.84087 4.90776 5.03078 5.16306 5.31081 5.73786 5.96623 6.16390 6.29624 6.53250 6.69828 6.75397 7.98111 8.37426 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.085488 B = 0.010832 C = 0.010200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.451257 B = 2584.293965 C = 2744.526839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.198 3.802 3 H 0.072 0.928 4 N -0.851 5.851 5 C -0.181 4.181 6 C -0.038 4.038 7 N -0.575 5.575 8 C 0.291 3.709 9 C -0.472 4.472 10 H 0.097 0.903 11 C 0.029 3.971 12 N -0.773 5.773 13 Si 1.014 2.986 14 H -0.254 1.254 15 H -0.262 1.262 16 H -0.254 1.254 17 O -0.245 6.245 18 H 0.087 0.913 19 H 0.058 0.942 20 H 0.038 0.962 21 H 0.343 0.657 22 H 0.355 0.645 23 H 0.171 0.829 24 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 1.825 5.626 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.086 3.914 3 H 0.090 0.910 4 N -0.384 5.384 5 C -0.236 4.236 6 C -0.182 4.182 7 N -0.307 5.307 8 C 0.106 3.894 9 C -0.507 4.507 10 H 0.115 0.885 11 C -0.192 4.192 12 N -0.398 5.398 13 Si 0.831 3.169 14 H -0.178 1.178 15 H -0.186 1.186 16 H -0.178 1.178 17 O -0.141 6.141 18 H 0.106 0.894 19 H 0.077 0.923 20 H 0.057 0.943 21 H 0.156 0.844 22 H 0.170 0.830 23 H 0.188 0.812 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.110 1.384 4.588 5.236 hybrid contribution 0.409 0.496 0.433 0.775 sum -1.701 1.879 5.021 5.625 Atomic orbital electron populations 1.21779 0.93227 1.01572 1.02569 1.19474 0.95449 0.92769 0.83659 0.91011 1.58546 1.16731 1.59136 1.03949 1.23398 1.18081 0.80897 1.01217 1.23451 1.02730 1.00223 0.91806 1.71352 1.30575 0.97368 1.31425 1.22852 0.92095 0.96059 0.78377 1.18616 1.42106 0.89269 1.00723 0.88516 1.27051 0.92538 1.03718 0.95874 1.70091 1.27179 1.31968 1.10586 0.84814 0.79938 0.74653 0.77480 1.17831 1.18615 1.17790 1.84433 1.68682 1.25860 1.35108 0.89392 0.92299 0.94292 0.84444 0.82968 0.81207 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.47 71.98 0.68 -3.40 14 2 C 0.20 6.84 3.84 44.17 0.17 7.01 14 3 H 0.07 2.11 8.14 -2.39 -0.02 2.09 14 4 N -0.85 -26.53 9.24 -171.80 -1.59 -28.12 14 5 C -0.18 -8.74 6.19 25.15 0.16 -8.58 14 6 C -0.04 -1.97 11.81 83.97 0.99 -0.98 14 7 N -0.58 -35.25 9.43 -309.37 -2.92 -38.17 14 8 C 0.29 17.90 7.74 84.92 0.66 18.55 14 9 C -0.47 -27.53 9.45 23.16 0.22 -27.31 14 10 H 0.10 5.25 7.85 -2.91 -0.02 5.23 14 11 C 0.03 1.54 5.50 85.38 0.47 2.01 14 12 N -0.77 -43.85 11.88 21.90 0.26 -43.59 14 13 Si 1.01 38.84 29.56 68.60 2.03 40.87 14 14 H -0.25 -9.31 7.11 99.48 0.71 -8.60 14 15 H -0.26 -9.34 7.11 99.48 0.71 -8.63 14 16 H -0.25 -9.27 7.11 99.48 0.71 -8.57 14 17 O -0.25 -14.01 10.82 -11.74 -0.13 -14.14 14 18 H 0.09 1.98 8.14 -2.39 -0.02 1.96 14 19 H 0.06 1.78 8.14 -2.39 -0.02 1.76 14 20 H 0.04 1.36 8.14 -2.39 -0.02 1.34 14 21 H 0.34 10.79 8.99 -89.69 -0.81 9.99 14 22 H 0.36 8.10 9.04 -89.69 -0.81 7.29 14 23 H 0.17 7.42 8.06 -2.91 -0.02 7.40 14 24 H 0.29 14.51 8.29 -92.71 -0.77 13.74 14 Total: -1.00 -71.46 221.03 0.61 -70.85 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.39 Total: 24.99 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.34 Total: -12.69 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.24 Total: -109.88 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.13 Total: -14.14 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -71.46 0.61 -70.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318794.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.187 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds