Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47725 * 2 1 4 4 N 1.46907 * 109.47005 * 239.99629 * 2 1 3 5 5 C 1.50706 * 109.46928 * 120.00134 * 2 1 3 6 6 C 1.35931 * 126.31777 * 260.00112 * 5 2 1 7 7 N 1.33064 * 107.97977 * 179.97438 * 6 5 2 8 8 C 1.32814 * 108.64924 * 359.97438 * 7 6 5 9 9 C 1.39803 * 125.79577 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99386 * 174.21948 * 9 8 7 11 11 C 1.40337 * 120.00139 * 354.21374 * 9 8 7 12 12 N 1.30626 * 120.00107 * 6.04926 * 11 9 8 13 13 Si 1.86799 * 119.99783 * 186.04069 * 11 9 8 14 14 H 1.48503 * 109.46870 * 94.98827 * 13 11 9 15 15 H 1.48501 * 109.47148 * 214.98683 * 13 11 9 16 16 H 1.48499 * 109.47475 * 334.98735 * 13 11 9 17 17 O 1.34590 * 126.32046 * 79.68323 * 5 2 1 18 18 H 1.09000 * 109.47725 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47079 * 59.99756 * 1 2 3 20 20 H 1.09006 * 109.47371 * 300.00365 * 1 2 3 21 21 H 1.00901 * 110.99550 * 60.00562 * 4 2 1 22 22 H 1.00901 * 110.99563 * 183.95566 * 4 2 1 23 23 H 1.08005 * 126.01360 * 359.93325 * 6 5 2 24 24 H 0.97000 * 120.00156 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0323 -0.7105 1.2305 6 6 2.4799 -0.1242 2.3723 7 7 2.8318 -1.0888 3.2186 8 6 2.6159 -2.2634 2.6374 9 6 2.8613 -3.5157 3.2084 10 1 2.5643 -4.4141 2.6877 11 6 3.4935 -3.6053 4.4581 12 7 3.7462 -2.5212 5.1415 13 14 3.9735 -5.2751 5.1442 14 1 5.3902 -5.5617 4.8032 15 1 3.8111 -5.2690 6.6203 16 1 3.1009 -6.3221 4.5546 17 8 2.1149 -2.0426 1.4040 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.6961 -0.2350 -2.0385 22 1 3.0261 -0.7627 -1.1909 23 1 2.5400 0.9378 2.5594 24 1 4.1829 -2.5832 6.0055 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261318795.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = -19.778627 kcal Electronic energy + Delta-G solvation = -10727.820334 eV Core-core repulsion = 8641.203365 eV Total energy + Delta-G solvation = -2086.616969 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.98159 -36.82881 -35.68797 -34.41476 -31.03185 -29.79506 -27.42619 -23.52518 -22.86032 -21.03221 -19.39462 -17.55344 -16.94561 -16.65700 -16.09404 -15.83524 -15.02254 -14.65469 -13.76171 -13.47437 -13.04426 -12.87891 -12.75491 -12.65369 -12.36896 -11.96033 -11.62273 -11.11837 -10.21524 -9.63860 -9.31641 -8.60265 -6.64876 1.09849 1.40456 1.57466 1.58994 2.18106 2.44238 2.82082 3.29238 3.63576 4.10569 4.27483 4.40303 4.51588 4.84165 4.90888 5.03030 5.16377 5.30946 5.73775 5.96514 6.16580 6.29515 6.53172 6.69837 6.75302 7.97769 8.37083 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.085444 B = 0.010844 C = 0.010196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.620329 B = 2581.450625 C = 2745.469598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.198 3.802 3 H 0.073 0.927 4 N -0.850 5.850 5 C -0.180 4.180 6 C -0.038 4.038 7 N -0.576 5.576 8 C 0.291 3.709 9 C -0.472 4.472 10 H 0.096 0.904 11 C 0.029 3.971 12 N -0.773 5.773 13 Si 1.014 2.986 14 H -0.259 1.259 15 H -0.261 1.261 16 H -0.251 1.251 17 O -0.245 6.245 18 H 0.038 0.962 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.355 0.645 22 H 0.343 0.657 23 H 0.171 0.829 24 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 1.854 -5.782 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.086 3.914 3 H 0.090 0.910 4 N -0.384 5.384 5 C -0.235 4.235 6 C -0.182 4.182 7 N -0.307 5.307 8 C 0.106 3.894 9 C -0.507 4.507 10 H 0.114 0.886 11 C -0.191 4.191 12 N -0.398 5.398 13 Si 0.831 3.169 14 H -0.183 1.183 15 H -0.185 1.185 16 H -0.175 1.175 17 O -0.141 6.141 18 H 0.057 0.943 19 H 0.106 0.894 20 H 0.077 0.923 21 H 0.170 0.830 22 H 0.156 0.844 23 H 0.188 0.812 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.845 1.409 -4.745 5.283 hybrid contribution 0.453 0.503 -0.443 0.810 sum -1.392 1.912 -5.189 5.702 Atomic orbital electron populations 1.21780 0.93229 1.01572 1.02577 1.19477 0.95449 0.92775 0.83666 0.90985 1.58552 1.16736 1.59126 1.03947 1.23401 1.18000 0.80894 1.01236 1.23449 1.02775 1.00225 0.91777 1.71349 1.30679 0.97397 1.31313 1.22857 0.91916 0.96057 0.78547 1.18637 1.38604 0.89285 1.04219 0.88558 1.27048 0.93179 1.03679 0.95223 1.70092 1.26681 1.32060 1.10970 0.84749 0.79498 0.74812 0.77805 1.18305 1.18550 1.17475 1.84436 1.68764 1.25853 1.35014 0.94296 0.89400 0.92283 0.82967 0.84441 0.81195 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.47 71.98 0.68 -3.40 14 2 C 0.20 6.83 3.84 44.17 0.17 6.99 14 3 H 0.07 2.12 8.14 -2.39 -0.02 2.10 14 4 N -0.85 -26.51 9.24 -171.79 -1.59 -28.10 14 5 C -0.18 -8.70 6.19 25.15 0.16 -8.55 14 6 C -0.04 -1.98 11.81 83.97 0.99 -0.98 14 7 N -0.58 -35.24 9.45 -309.37 -2.92 -38.17 14 8 C 0.29 17.90 7.73 84.92 0.66 18.56 14 9 C -0.47 -27.56 9.45 23.16 0.22 -27.34 14 10 H 0.10 5.26 7.86 -2.91 -0.02 5.23 14 11 C 0.03 1.57 5.49 85.38 0.47 2.04 14 12 N -0.77 -43.80 11.91 21.89 0.26 -43.54 14 13 Si 1.01 38.88 29.57 68.60 2.03 40.91 14 14 H -0.26 -9.45 7.11 99.48 0.71 -8.75 14 15 H -0.26 -9.36 7.11 99.48 0.71 -8.65 14 16 H -0.25 -9.20 7.11 99.48 0.71 -8.49 14 17 O -0.25 -14.00 10.82 -11.75 -0.13 -14.13 14 18 H 0.04 1.36 8.14 -2.39 -0.02 1.34 14 19 H 0.09 1.97 8.14 -2.39 -0.02 1.95 14 20 H 0.06 1.78 8.14 -2.38 -0.02 1.76 14 21 H 0.36 8.09 9.04 -89.69 -0.81 7.28 14 22 H 0.34 10.78 8.99 -89.69 -0.81 9.98 14 23 H 0.17 7.42 8.06 -2.91 -0.02 7.39 14 24 H 0.29 14.45 8.29 -92.71 -0.77 13.68 14 Total: -1.00 -71.49 221.08 0.61 -70.88 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.39 Total: 24.82 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 3.34 Total: -12.68 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -4.25 Total: -109.81 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.13 Total: -14.13 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -71.49 0.61 -70.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318795.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.106 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds