Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35047 * 126.39328 * 2 1 4 4 N 1.30498 * 108.69562 * 180.02562 * 3 2 1 5 5 C 1.34129 * 109.25671 * 359.75485 * 4 3 2 6 6 C 1.50697 * 125.98955 * 180.24913 * 5 4 3 7 7 H 1.09005 * 109.47138 * 185.18085 * 6 5 4 8 8 O 1.42899 * 109.47256 * 65.18044 * 6 5 4 9 9 C 1.50707 * 109.47196 * 305.17784 * 6 5 4 10 10 H 1.07994 * 119.99739 * 0.02562 * 9 6 5 11 11 C 1.37881 * 119.99845 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00123 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99681 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47295 * 89.99560 * 13 11 9 15 15 H 1.48500 * 109.46917 * 209.99482 * 13 11 9 16 16 H 1.48493 * 109.47057 * 329.99177 * 13 11 9 17 17 C 1.34666 * 108.02165 * 0.40230 * 5 4 3 18 18 H 1.09001 * 109.46414 * 269.99720 * 1 2 3 19 19 H 1.09001 * 109.47118 * 29.99066 * 1 2 3 20 20 H 1.08994 * 109.47154 * 149.99652 * 1 2 3 21 21 H 1.07999 * 125.65451 * 359.97438 * 3 2 1 22 22 H 0.96698 * 113.99563 * 299.99437 * 8 6 5 23 23 H 0.96993 * 119.99619 * 179.97438 * 12 11 9 24 24 H 1.08002 * 126.59556 * 179.87817 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5096 0.6904 -0.0006 5 6 3.5461 -0.6504 0.0045 6 6 4.7890 -1.5024 0.0110 7 1 4.5103 -2.5524 -0.0787 8 8 5.4984 -1.3008 1.2350 9 6 5.6693 -1.1156 -1.1495 10 1 5.3599 -0.3309 -1.8239 11 6 6.8698 -1.7634 -1.3501 12 7 7.2469 -2.7186 -0.5284 13 14 7.9612 -1.2834 -2.7880 14 1 8.8956 -0.2101 -2.3636 15 1 8.7379 -2.4670 -3.2366 16 1 7.1179 -0.7918 -3.9070 17 6 2.2773 -1.1018 -0.0007 18 1 -0.3632 -0.0001 1.0277 19 1 -0.3633 0.8901 -0.5137 20 1 -0.3633 -0.8899 -0.5139 21 1 1.9335 2.1145 -0.0004 22 1 5.7783 -0.3869 1.3813 23 1 8.0912 -3.1746 -0.6698 24 1 1.9613 -2.1345 -0.0005 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306221660.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = 13.687871 kcal Electronic energy + Delta-G solvation = -10704.993726 eV Core-core repulsion = 8619.827973 eV Total energy + Delta-G solvation = -2085.165753 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.31521 -35.45616 -33.22385 -31.95099 -29.32054 -27.28383 -25.75102 -22.69748 -20.55833 -19.31951 -16.79339 -16.54897 -15.15332 -14.48743 -14.26415 -13.83205 -13.38747 -12.82379 -12.54769 -12.43514 -12.17272 -11.06889 -10.80748 -10.78337 -10.06237 -9.34901 -9.08988 -8.88181 -8.44098 -8.10411 -7.60180 -5.86057 -4.00012 2.68174 3.29629 3.39234 3.44826 3.49541 3.98179 4.54863 4.85768 5.18652 5.20824 5.38941 5.41527 5.49970 6.22090 6.44202 6.56588 6.84754 7.52841 7.64139 7.90686 8.02806 8.34879 8.92241 9.02676 9.53505 9.73865 11.18545 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067625 B = 0.011353 C = 0.010656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.949935 B = 2465.751505 C = 2627.027286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.474 5.474 3 C 0.157 3.843 4 N -0.475 5.475 5 C 0.021 3.979 6 C 0.300 3.700 7 H 0.066 0.934 8 O -0.562 6.562 9 C -0.546 4.546 10 H 0.058 0.942 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.079 4.079 18 H 0.068 0.932 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.195 0.805 22 H 0.352 0.648 23 H 0.259 0.741 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 4.457 0.387 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.161 5.161 3 C -0.125 4.125 4 N -0.194 5.194 5 C -0.109 4.109 6 C 0.241 3.759 7 H 0.084 0.916 8 O -0.364 6.364 9 C -0.584 4.584 10 H 0.076 0.924 11 C -0.131 4.131 12 N -0.504 5.504 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.209 4.209 18 H 0.087 0.913 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.211 0.789 22 H 0.196 0.804 23 H 0.068 0.932 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.578 4.158 0.492 12.311 hybrid contribution -0.227 0.375 -0.978 1.071 sum -11.805 4.533 -0.486 12.655 Atomic orbital electron populations 1.21869 0.77976 1.03868 1.02706 1.45322 1.06738 1.07382 1.56654 1.24927 0.86251 0.93117 1.08178 1.70205 1.18219 1.12751 1.18232 1.22566 0.96067 0.90643 1.01595 1.17839 0.82237 0.91984 0.83804 0.91628 1.86506 1.76493 1.31310 1.42107 1.21579 1.04373 1.20308 1.12178 0.92362 1.25050 0.97685 0.94489 0.95831 1.70079 1.21586 1.22806 1.35931 0.86625 0.80633 0.77933 0.82877 1.20573 1.21296 1.19997 1.22513 0.91194 0.92009 1.15140 0.91318 0.90182 0.90247 0.78872 0.80393 0.93150 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 11.18 59.85 0.67 1.44 14 2 N -0.47 -7.60 3.15 -125.99 -0.40 -7.99 14 3 C 0.16 2.75 12.56 -90.37 -1.14 1.61 14 4 N -0.47 -10.82 11.23 -10.88 -0.12 -10.94 14 5 C 0.02 0.49 5.89 -82.85 -0.49 0.00 14 6 C 0.30 8.26 3.32 -29.03 -0.10 8.16 14 7 H 0.07 1.88 8.11 -51.93 -0.42 1.46 14 8 O -0.56 -15.85 12.72 -35.23 -0.45 -16.29 14 9 C -0.55 -16.12 8.73 -34.44 -0.30 -16.42 14 10 H 0.06 1.76 7.74 -52.49 -0.41 1.35 14 11 C 0.07 2.18 5.40 -17.82 -0.10 2.08 14 12 N -0.87 -26.53 12.84 55.43 0.71 -25.82 14 13 Si 0.89 22.35 29.54 -169.99 -5.02 17.32 14 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 14 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 14 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 14 17 C -0.08 -1.54 11.46 -16.56 -0.19 -1.73 14 18 H 0.07 0.57 8.14 -51.93 -0.42 0.15 14 19 H 0.08 0.59 8.14 -51.93 -0.42 0.17 14 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 14 21 H 0.19 2.47 8.06 -52.49 -0.42 2.05 14 22 H 0.35 9.28 9.03 45.56 0.41 9.69 14 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 14 24 H 0.17 2.81 8.06 -52.49 -0.42 2.39 14 LS Contribution 223.07 15.07 3.36 3.36 Total: -1.00 -34.96 223.07 -5.22 -40.18 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -1.66 Total: 5.04 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.64 Total: -4.85 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.19 Total: -44.76 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.45 Total: -16.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -34.96 -5.22 -40.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221660.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.866 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds