Wall clock time and date at job start Mon Mar 30 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35047 * 126.39328 * 2 1 4 4 N 1.30498 * 108.69562 * 180.02562 * 3 2 1 5 5 C 1.34129 * 109.25671 * 359.75485 * 4 3 2 6 6 C 1.50697 * 125.98955 * 180.24913 * 5 4 3 7 7 H 1.09005 * 109.47138 * 185.18085 * 6 5 4 8 8 O 1.42899 * 109.47256 * 65.18044 * 6 5 4 9 9 C 1.50707 * 109.47196 * 305.17784 * 6 5 4 10 10 H 1.07994 * 119.99739 * 0.02562 * 9 6 5 11 11 C 1.37881 * 119.99845 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00123 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99681 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47295 * 89.99560 * 13 11 9 15 15 H 1.48500 * 109.46917 * 209.99482 * 13 11 9 16 16 H 1.48493 * 109.47057 * 329.99177 * 13 11 9 17 17 C 1.34666 * 108.02165 * 0.40230 * 5 4 3 18 18 H 1.09001 * 109.46414 * 269.99720 * 1 2 3 19 19 H 1.09001 * 109.47118 * 29.99066 * 1 2 3 20 20 H 1.08994 * 109.47154 * 149.99652 * 1 2 3 21 21 H 1.07999 * 125.65451 * 359.97438 * 3 2 1 22 22 H 0.96698 * 113.99563 * 299.99437 * 8 6 5 23 23 H 0.96993 * 119.99619 * 179.97438 * 12 11 9 24 24 H 1.08002 * 126.59556 * 179.87817 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5096 0.6904 -0.0006 5 6 3.5461 -0.6504 0.0045 6 6 4.7890 -1.5024 0.0110 7 1 4.5103 -2.5524 -0.0787 8 8 5.4984 -1.3008 1.2350 9 6 5.6693 -1.1156 -1.1495 10 1 5.3599 -0.3309 -1.8239 11 6 6.8698 -1.7634 -1.3501 12 7 7.2469 -2.7186 -0.5284 13 14 7.9612 -1.2834 -2.7880 14 1 8.8956 -0.2101 -2.3636 15 1 8.7379 -2.4670 -3.2366 16 1 7.1179 -0.7918 -3.9070 17 6 2.2773 -1.1018 -0.0007 18 1 -0.3632 -0.0001 1.0277 19 1 -0.3633 0.8901 -0.5137 20 1 -0.3633 -0.8899 -0.5139 21 1 1.9335 2.1145 -0.0004 22 1 5.7783 -0.3869 1.3813 23 1 8.0912 -3.1746 -0.6698 24 1 1.9613 -2.1345 -0.0005 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306221660.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:50 Heat of formation + Delta-G solvation = -12.751086 kcal Electronic energy + Delta-G solvation = -10706.140205 eV Core-core repulsion = 8619.827973 eV Total energy + Delta-G solvation = -2086.312232 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.76157 -37.51753 -34.58975 -34.21219 -31.02963 -28.86609 -27.28366 -24.67666 -21.93689 -20.98138 -18.95713 -17.98445 -16.64092 -16.36642 -16.14725 -15.45192 -14.94385 -14.54755 -14.14797 -13.62749 -13.34016 -13.24111 -12.82880 -12.79510 -12.07899 -11.32380 -10.90866 -10.65922 -10.29694 -10.17185 -9.18789 -8.09167 -6.32223 1.26315 1.39929 1.42180 1.52936 2.12639 2.33304 2.48301 3.16199 3.91406 4.07464 4.18599 4.39029 4.52395 4.64877 4.75467 4.88405 5.37995 5.60608 5.74319 5.91036 6.16415 6.55333 6.75235 7.32571 7.40857 7.51076 8.95092 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.067625 B = 0.011353 C = 0.010656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.949935 B = 2465.751505 C = 2627.027286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.464 5.464 3 C 0.171 3.829 4 N -0.529 5.529 5 C -0.029 4.029 6 C 0.299 3.701 7 H 0.041 0.959 8 O -0.577 6.577 9 C -0.560 4.560 10 H 0.045 0.955 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.963 3.037 14 H -0.274 1.274 15 H -0.276 1.276 16 H -0.271 1.271 17 C -0.068 4.068 18 H 0.088 0.912 19 H 0.111 0.889 20 H 0.093 0.907 21 H 0.243 0.757 22 H 0.355 0.645 23 H 0.262 0.738 24 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.842 5.560 -0.350 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.148 5.148 3 C -0.111 4.111 4 N -0.249 5.249 5 C -0.157 4.157 6 C 0.240 3.760 7 H 0.059 0.941 8 O -0.380 6.380 9 C -0.598 4.598 10 H 0.063 0.937 11 C -0.179 4.179 12 N -0.540 5.540 13 Si 0.787 3.213 14 H -0.200 1.200 15 H -0.201 1.201 16 H -0.195 1.195 17 C -0.201 4.201 18 H 0.107 0.893 19 H 0.129 0.871 20 H 0.112 0.888 21 H 0.258 0.742 22 H 0.200 0.800 23 H 0.071 0.929 24 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.326 5.266 -0.245 14.331 hybrid contribution 0.161 0.068 -0.705 0.727 sum -13.166 5.334 -0.951 14.237 Atomic orbital electron populations 1.22342 0.73719 1.06229 1.04777 1.45581 1.09083 1.05665 1.54472 1.25736 0.85004 0.95156 1.05230 1.70031 1.21698 1.12372 1.20775 1.21957 0.96092 0.91431 1.06246 1.17562 0.83977 0.91618 0.82810 0.94117 1.86438 1.77184 1.31679 1.42678 1.21776 1.05313 1.20004 1.12747 0.93676 1.25903 0.99058 0.94294 0.98647 1.70198 1.22205 1.23829 1.37781 0.85515 0.78543 0.77935 0.79263 1.19980 1.20097 1.19541 1.22650 0.90507 0.93797 1.13109 0.89325 0.87057 0.88830 0.74153 0.80047 0.92871 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 11.18 127.77 1.43 2.46 14 2 N -0.46 -13.41 3.15 -552.52 -1.74 -15.15 14 3 C 0.17 5.55 12.56 180.26 2.26 7.81 14 4 N -0.53 -23.94 11.23 -188.32 -2.11 -26.06 14 5 C -0.03 -1.39 5.89 41.39 0.24 -1.14 14 6 C 0.30 17.08 3.32 29.10 0.10 17.18 14 7 H 0.04 2.47 8.11 -2.38 -0.02 2.45 14 8 O -0.58 -33.87 12.72 -148.98 -1.90 -35.76 14 9 C -0.56 -34.03 8.73 25.60 0.22 -33.81 14 10 H 0.04 2.79 7.74 -2.91 -0.02 2.77 14 11 C 0.02 1.34 5.40 84.66 0.46 1.79 14 12 N -0.90 -56.39 12.84 21.45 0.28 -56.11 14 13 Si 0.96 46.43 29.54 68.60 2.03 48.45 14 14 H -0.27 -12.91 7.11 99.48 0.71 -12.20 14 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 14 16 H -0.27 -12.74 7.11 99.48 0.71 -12.04 14 17 C -0.07 -2.58 11.46 83.09 0.95 -1.63 14 18 H 0.09 1.05 8.14 -2.39 -0.02 1.03 14 19 H 0.11 1.03 8.14 -2.39 -0.02 1.01 14 20 H 0.09 1.18 8.14 -2.39 -0.02 1.16 14 21 H 0.24 5.06 8.06 -2.91 -0.02 5.04 14 22 H 0.35 19.63 9.03 -74.06 -0.67 18.96 14 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 14 24 H 0.19 6.07 8.06 -2.91 -0.02 6.04 14 Total: -1.00 -77.89 223.07 2.75 -75.14 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.53 Total: 16.82 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.67 Total: -7.33 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.58 Total: -97.33 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.90 Total: -35.76 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -77.89 2.75 -75.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221660.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.391 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds