Wall clock time and date at job start Mon Mar 30 2020 01:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 H 1.09004 * 109.47000 * 64.68980 * 6 5 4 8 8 O 1.42904 * 109.46989 * 184.68958 * 6 5 4 9 9 C 1.50695 * 109.47240 * 304.68834 * 6 5 4 10 10 H 1.08004 * 120.00178 * 359.97438 * 9 6 5 11 11 C 1.37884 * 120.00046 * 179.97438 * 9 6 5 12 12 N 1.31508 * 119.99718 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99847 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47157 * 90.00305 * 13 11 9 15 15 H 1.48506 * 109.46541 * 210.00285 * 13 11 9 16 16 H 1.48506 * 109.47201 * 329.99817 * 13 11 9 17 17 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 18 18 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 19 19 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 20 20 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 21 21 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 22 22 H 0.96701 * 113.99982 * 59.99847 * 8 6 5 23 23 H 0.97010 * 119.99712 * 179.97438 * 12 11 9 24 24 H 1.07999 * 126.58848 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 1 5.3330 -1.3463 0.9348 8 8 4.4232 -2.8793 -0.1096 9 6 5.6657 -1.1187 -1.1608 10 1 5.3537 -0.3363 -1.8368 11 6 6.8660 -1.7664 -1.3629 12 7 7.2456 -2.7194 -0.5401 13 14 7.9530 -1.2900 -2.8055 14 1 8.8879 -0.2149 -2.3871 15 1 8.7290 -2.4746 -3.2528 16 1 7.1060 -0.8022 -3.9236 17 6 2.2772 -1.1018 -0.0021 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8901 -0.5137 20 1 -0.3634 -0.8899 -0.5139 21 1 1.9335 2.1145 -0.0004 22 1 3.9348 -3.0916 -0.9168 23 1 8.0899 -3.1754 -0.6825 24 1 1.9612 -2.1345 -0.0025 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306221661.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:53 Heat of formation + Delta-G solvation = 14.268456 kcal Electronic energy + Delta-G solvation = -10724.455168 eV Core-core repulsion = 8639.314591 eV Total energy + Delta-G solvation = -2085.140577 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.30950 -35.58790 -33.32669 -32.01366 -28.98370 -27.47650 -25.75647 -22.72361 -20.48778 -19.31303 -16.94128 -16.55139 -15.15163 -14.48387 -14.27343 -13.72223 -13.47146 -12.90897 -12.55688 -12.42078 -12.19081 -11.13100 -10.82359 -10.77136 -10.05541 -9.34439 -9.09534 -8.89088 -8.49855 -8.25557 -7.49684 -5.86995 -4.01377 2.69975 3.31325 3.38934 3.44385 3.48912 4.00816 4.54367 4.86733 5.18633 5.20266 5.37383 5.40244 5.54373 6.15445 6.38457 6.58933 6.89116 7.50314 7.75625 7.89581 8.00592 8.32733 8.83291 9.05467 9.44971 9.71570 11.17343 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.069262 B = 0.011538 C = 0.010557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.165465 B = 2426.258574 C = 2651.635701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.475 5.475 3 C 0.156 3.844 4 N -0.475 5.475 5 C 0.019 3.981 6 C 0.298 3.702 7 H 0.071 0.929 8 O -0.560 6.560 9 C -0.544 4.544 10 H 0.058 0.942 11 C 0.074 3.926 12 N -0.866 5.866 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.081 4.081 18 H 0.068 0.932 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.195 0.805 22 H 0.345 0.655 23 H 0.259 0.741 24 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 3.841 -0.123 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.162 5.162 3 C -0.125 4.125 4 N -0.195 5.195 5 C -0.110 4.110 6 C 0.239 3.761 7 H 0.088 0.912 8 O -0.362 6.362 9 C -0.582 4.582 10 H 0.077 0.923 11 C -0.131 4.131 12 N -0.503 5.503 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.210 4.210 18 H 0.086 0.914 19 H 0.098 0.902 20 H 0.097 0.903 21 H 0.211 0.789 22 H 0.189 0.811 23 H 0.069 0.931 24 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.480 4.160 0.517 12.222 hybrid contribution -0.525 -0.075 -1.338 1.439 sum -12.005 4.086 -0.822 12.708 Atomic orbital electron populations 1.21860 0.78003 1.03835 1.02679 1.45314 1.06718 1.07392 1.56749 1.24951 0.86176 0.93169 1.08222 1.70195 1.18175 1.12647 1.18449 1.22565 0.95992 0.90714 1.01704 1.17726 0.84259 0.76053 0.98025 0.91185 1.86592 1.77517 1.28298 1.43761 1.21521 1.04054 1.20383 1.12277 0.92333 1.25056 0.97309 0.94518 0.96174 1.70081 1.21356 1.22615 1.36272 0.86614 0.80607 0.77880 0.82897 1.20556 1.21290 1.19974 1.22381 0.91091 0.92030 1.15522 0.91360 0.90212 0.90258 0.78859 0.81090 0.93126 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.18 59.85 0.67 1.45 14 2 N -0.48 -7.63 3.15 -125.99 -0.40 -8.02 14 3 C 0.16 2.77 12.56 -90.37 -1.14 1.63 14 4 N -0.47 -11.02 11.23 -10.87 -0.12 -11.15 14 5 C 0.02 0.47 6.25 -82.85 -0.52 -0.05 14 6 C 0.30 8.20 3.38 -29.04 -0.10 8.10 14 7 H 0.07 2.13 8.14 -51.93 -0.42 1.70 14 8 O -0.56 -14.74 12.13 -35.23 -0.43 -15.17 14 9 C -0.54 -16.04 8.73 -34.44 -0.30 -16.34 14 10 H 0.06 1.76 7.74 -52.48 -0.41 1.36 14 11 C 0.07 2.18 5.40 -17.82 -0.10 2.08 14 12 N -0.87 -26.44 12.84 55.43 0.71 -25.73 14 13 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 14 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 14 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 14 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 14 17 C -0.08 -1.57 10.75 -16.56 -0.18 -1.75 14 18 H 0.07 0.57 8.14 -51.93 -0.42 0.15 14 19 H 0.08 0.60 8.14 -51.93 -0.42 0.17 14 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 14 21 H 0.19 2.50 8.06 -52.49 -0.42 2.07 14 22 H 0.35 7.97 8.79 45.56 0.40 8.37 14 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 14 24 H 0.17 2.89 7.83 -52.49 -0.41 2.48 14 LS Contribution 221.76 15.07 3.34 3.34 Total: -1.00 -34.96 221.76 -5.24 -40.19 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -1.66 Total: 4.14 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.66 Total: -4.88 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.19 Total: -44.90 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.43 Total: -15.17 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -34.96 -5.24 -40.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221661.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.460 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds