Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 H 1.09004 * 109.47000 * 64.68980 * 6 5 4 8 8 O 1.42904 * 109.46989 * 184.68958 * 6 5 4 9 9 C 1.50695 * 109.47240 * 304.68834 * 6 5 4 10 10 H 1.08004 * 120.00178 * 359.97438 * 9 6 5 11 11 C 1.37884 * 120.00046 * 179.97438 * 9 6 5 12 12 N 1.31508 * 119.99718 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99847 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47157 * 90.00305 * 13 11 9 15 15 H 1.48506 * 109.46541 * 210.00285 * 13 11 9 16 16 H 1.48506 * 109.47201 * 329.99817 * 13 11 9 17 17 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 18 18 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 19 19 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 20 20 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 21 21 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 22 22 H 0.96701 * 113.99982 * 59.99847 * 8 6 5 23 23 H 0.97010 * 119.99712 * 179.97438 * 12 11 9 24 24 H 1.07999 * 126.58848 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 1 5.3330 -1.3463 0.9348 8 8 4.4232 -2.8793 -0.1096 9 6 5.6657 -1.1187 -1.1608 10 1 5.3537 -0.3363 -1.8368 11 6 6.8660 -1.7664 -1.3629 12 7 7.2456 -2.7194 -0.5401 13 14 7.9530 -1.2900 -2.8055 14 1 8.8879 -0.2149 -2.3871 15 1 8.7290 -2.4746 -3.2528 16 1 7.1060 -0.8022 -3.9236 17 6 2.2772 -1.1018 -0.0021 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8901 -0.5137 20 1 -0.3634 -0.8899 -0.5139 21 1 1.9335 2.1145 -0.0004 22 1 3.9348 -3.0916 -0.9168 23 1 8.0899 -3.1754 -0.6825 24 1 1.9612 -2.1345 -0.0025 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306221661.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = -12.272724 kcal Electronic energy + Delta-G solvation = -10725.606080 eV Core-core repulsion = 8639.314591 eV Total energy + Delta-G solvation = -2086.291489 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.77103 -37.61417 -34.67764 -34.25419 -30.69032 -29.07312 -27.27180 -24.71367 -21.85879 -20.98882 -19.04200 -18.03233 -16.65120 -16.40390 -16.10426 -15.37797 -14.89268 -14.68694 -14.20510 -13.59558 -13.34890 -13.21919 -12.83141 -12.78066 -12.06361 -11.37790 -10.83066 -10.72771 -10.33523 -10.23028 -9.12852 -8.09195 -6.33286 1.27828 1.39944 1.42044 1.52919 2.13519 2.33529 2.49119 3.13216 3.85960 4.07412 4.20534 4.33605 4.53076 4.68984 4.76297 4.93059 5.42251 5.60861 5.71683 5.92552 6.14629 6.52983 6.75630 7.28308 7.39517 7.58866 8.94404 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.069262 B = 0.011538 C = 0.010557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.165465 B = 2426.258574 C = 2651.635701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.465 5.465 3 C 0.171 3.829 4 N -0.536 5.536 5 C -0.032 4.032 6 C 0.303 3.697 7 H 0.021 0.979 8 O -0.568 6.568 9 C -0.559 4.559 10 H 0.045 0.955 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.964 3.036 14 H -0.275 1.275 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.062 4.062 18 H 0.088 0.912 19 H 0.111 0.889 20 H 0.094 0.906 21 H 0.242 0.758 22 H 0.359 0.641 23 H 0.263 0.737 24 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 4.661 -1.099 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.149 5.149 3 C -0.111 4.111 4 N -0.256 5.256 5 C -0.160 4.160 6 C 0.244 3.756 7 H 0.039 0.961 8 O -0.371 6.371 9 C -0.597 4.597 10 H 0.064 0.936 11 C -0.179 4.179 12 N -0.540 5.540 13 Si 0.788 3.212 14 H -0.201 1.201 15 H -0.201 1.201 16 H -0.194 1.194 17 C -0.194 4.194 18 H 0.106 0.894 19 H 0.129 0.871 20 H 0.113 0.887 21 H 0.258 0.742 22 H 0.204 0.796 23 H 0.072 0.928 24 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.481 4.984 -0.462 14.381 hybrid contribution -0.063 -0.294 -0.982 1.027 sum -13.545 4.690 -1.444 14.406 Atomic orbital electron populations 1.22340 0.73685 1.06254 1.04753 1.45588 1.09092 1.05685 1.54515 1.25732 0.84865 0.95235 1.05279 1.70020 1.21866 1.12600 1.21154 1.21970 0.96162 0.91331 1.06565 1.17225 0.86140 0.77120 0.95095 0.96089 1.86500 1.77935 1.28053 1.44646 1.21727 1.05098 1.20139 1.12751 0.93626 1.25916 0.98614 0.94330 0.99048 1.70203 1.22000 1.23688 1.38078 0.85500 0.78528 0.77868 0.79266 1.20078 1.20066 1.19384 1.22485 0.90168 0.93712 1.13044 0.89390 0.87093 0.88725 0.74156 0.79570 0.92844 0.79410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 11.18 127.77 1.43 2.46 14 2 N -0.46 -13.42 3.15 -552.52 -1.74 -15.16 14 3 C 0.17 5.63 12.56 180.26 2.26 7.90 14 4 N -0.54 -24.93 11.23 -188.31 -2.11 -27.04 14 5 C -0.03 -1.55 6.25 41.39 0.26 -1.29 14 6 C 0.30 17.41 3.38 29.10 0.10 17.51 14 7 H 0.02 1.39 8.14 -2.38 -0.02 1.37 14 8 O -0.57 -30.79 12.13 -148.98 -1.81 -32.59 14 9 C -0.56 -34.02 8.73 25.60 0.22 -33.79 14 10 H 0.05 2.83 7.74 -2.91 -0.02 2.80 14 11 C 0.02 1.34 5.40 84.66 0.46 1.80 14 12 N -0.90 -56.40 12.84 21.45 0.28 -56.12 14 13 Si 0.96 46.41 29.54 68.60 2.03 48.43 14 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 14 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 14 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 14 17 C -0.06 -2.32 10.75 83.09 0.89 -1.42 14 18 H 0.09 1.04 8.14 -2.38 -0.02 1.02 14 19 H 0.11 1.02 8.14 -2.39 -0.02 1.00 14 20 H 0.09 1.17 8.14 -2.39 -0.02 1.15 14 21 H 0.24 5.17 8.06 -2.91 -0.02 5.14 14 22 H 0.36 16.84 8.79 -74.06 -0.65 16.19 14 23 H 0.26 15.37 8.31 -92.70 -0.77 14.60 14 24 H 0.19 6.11 7.83 -2.91 -0.02 6.09 14 Total: -1.00 -78.89 221.76 2.82 -76.08 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.55 Total: 13.25 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.62 Total: -6.84 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.58 Total: -98.33 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.81 Total: -32.59 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -78.89 2.82 -76.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221661.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.804 kcal (2) G-P(sol) polarization free energy of solvation -78.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds