Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47145 * 2 1 4 4 N 1.46497 * 109.47364 * 239.99772 * 2 1 3 5 5 C 1.36928 * 119.99959 * 85.00129 * 4 2 1 6 6 H 1.07999 * 120.00528 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00169 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00302 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99663 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47291 * 89.99886 * 9 7 5 11 11 H 1.48497 * 109.46982 * 209.99766 * 9 7 5 12 12 H 1.48499 * 109.47393 * 329.99766 * 9 7 5 13 13 C 1.50706 * 109.46717 * 119.99554 * 2 1 3 14 14 C 1.41375 * 126.80242 * 274.71259 * 13 2 1 15 15 C 1.35451 * 103.98258 * 179.88976 * 14 13 2 16 16 O 1.34043 * 106.44954 * 0.36769 * 15 14 13 17 17 N 1.20921 * 111.56080 * 359.74996 * 16 15 14 18 18 H 1.09002 * 109.46745 * 60.00296 * 1 2 3 19 19 H 1.08994 * 109.47580 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47528 * 300.00621 * 1 2 3 21 21 H 0.97001 * 119.99887 * 265.00038 * 4 2 1 22 22 H 0.97002 * 119.99897 * 179.97438 * 8 7 5 23 23 H 1.07997 * 128.01016 * 0.02562 * 14 13 2 24 24 H 1.08008 * 126.77801 * 180.13738 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8928 1.0404 -2.4241 7 6 2.6125 -0.6618 -3.5089 8 7 2.7378 -0.0054 -4.6428 9 14 3.0568 -2.4743 -3.4249 10 1 1.8597 -3.2928 -3.7449 11 1 4.1326 -2.7662 -4.4060 12 1 3.5312 -2.8049 -2.0571 13 6 2.0323 -0.7104 1.2306 14 6 2.2268 -0.1480 2.5130 15 6 2.6812 -1.1833 3.2589 16 8 2.7414 -2.2431 2.4404 17 7 2.3782 -1.9619 1.3218 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 2.2491 -1.6318 -1.1525 22 1 3.0619 -0.4626 -5.4346 23 1 2.0514 0.8706 2.8261 24 1 2.9466 -1.1588 4.3056 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306601382.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = 75.106886 kcal Electronic energy + Delta-G solvation = -10754.148395 eV Core-core repulsion = 8671.645971 eV Total energy + Delta-G solvation = -2082.502425 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.61584 -36.27800 -33.28380 -31.68135 -30.99925 -28.93800 -24.40814 -22.71025 -22.49274 -19.78114 -18.21222 -17.22246 -16.97737 -15.10789 -14.47488 -13.71352 -13.40467 -13.00299 -12.71742 -12.35551 -11.88338 -11.22100 -10.90456 -10.76746 -10.68927 -10.06817 -9.76676 -9.57985 -9.37545 -8.92538 -7.30391 -5.77432 -3.13617 1.78376 2.60766 3.42656 3.49004 3.51906 3.54155 4.58463 4.62806 4.78903 5.36486 5.45160 5.52302 5.68614 5.77913 5.99280 6.13730 6.24554 6.43812 6.61230 6.90552 7.96256 8.41169 8.64426 9.20523 9.92689 10.12730 11.40252 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.054840 B = 0.012997 C = 0.011306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.458088 B = 2153.750512 C = 2475.876688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.250 3.750 3 H 0.076 0.924 4 N -0.745 5.745 5 C -0.248 4.248 6 H 0.093 0.907 7 C 0.009 3.991 8 N -0.932 5.932 9 Si 0.879 3.121 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.273 1.273 13 C 0.026 3.974 14 C -0.230 4.230 15 C -0.076 4.076 16 O 0.092 5.908 17 N -0.360 5.360 18 H 0.068 0.932 19 H 0.047 0.953 20 H 0.043 0.957 21 H 0.369 0.631 22 H 0.260 0.740 23 H 0.169 0.831 24 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -0.993 15.693 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.139 3.861 3 H 0.094 0.906 4 N -0.388 5.388 5 C -0.377 4.377 6 H 0.111 0.889 7 C -0.187 4.187 8 N -0.579 5.579 9 Si 0.709 3.291 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.199 1.199 13 C -0.134 4.134 14 C -0.251 4.251 15 C -0.157 4.157 16 O 0.027 5.973 17 N -0.064 5.064 18 H 0.087 0.913 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.203 0.797 22 H 0.070 0.930 23 H 0.187 0.813 24 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.524 -1.845 14.622 14.816 hybrid contribution 0.278 -0.427 0.446 0.677 sum -1.246 -2.272 15.068 15.289 Atomic orbital electron populations 1.22373 0.97101 1.01451 1.01036 1.18660 0.92391 0.94457 0.80569 0.90634 1.42756 1.79613 1.09986 1.06479 1.19051 1.37584 0.95718 0.85379 0.88947 1.24630 1.01022 0.97590 0.95483 1.69699 1.52339 1.35639 1.00231 0.86601 0.78303 0.86778 0.77412 1.20926 1.21619 1.19863 1.24388 1.00642 0.90400 0.98020 1.22710 1.07553 1.01865 0.93005 1.25939 1.03847 0.86899 0.99049 1.84854 1.62675 1.35275 1.14535 1.73806 1.15898 1.17788 0.98908 0.91276 0.93349 0.93769 0.79689 0.92994 0.81330 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.47 37.16 0.35 -2.52 14 2 C 0.25 5.11 3.40 -69.08 -0.23 4.87 14 3 H 0.08 1.50 8.08 -51.93 -0.42 1.08 14 4 N -0.74 -18.90 4.92 -54.55 -0.27 -19.17 14 5 C -0.25 -7.18 10.41 -15.06 -0.16 -7.34 14 6 H 0.09 2.79 8.06 -52.49 -0.42 2.36 14 7 C 0.01 0.27 5.50 -17.43 -0.10 0.17 14 8 N -0.93 -29.73 13.97 55.49 0.78 -28.96 14 9 Si 0.88 23.32 27.74 -169.99 -4.71 18.60 14 10 H -0.28 -7.43 7.11 56.52 0.40 -7.03 14 11 H -0.29 -7.66 7.11 56.52 0.40 -7.26 14 12 H -0.27 -7.13 6.52 56.52 0.37 -6.76 14 13 C 0.03 0.47 6.27 -82.10 -0.52 -0.04 14 14 C -0.23 -3.11 11.12 -39.38 -0.44 -3.55 14 15 C -0.08 -0.88 12.30 29.74 0.37 -0.52 14 16 O 0.09 1.46 11.20 17.17 0.19 1.65 14 17 N -0.36 -7.03 11.37 33.42 0.38 -6.65 14 18 H 0.07 1.32 8.14 -51.93 -0.42 0.89 14 19 H 0.05 0.90 8.14 -51.93 -0.42 0.48 14 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 14 21 H 0.37 9.65 5.11 -40.82 -0.21 9.44 14 22 H 0.26 7.90 8.31 -40.82 -0.34 7.57 14 23 H 0.17 1.75 8.06 -52.49 -0.42 1.32 14 24 H 0.21 1.32 8.06 -52.48 -0.42 0.89 14 LS Contribution 218.50 15.07 3.29 3.29 Total: -1.00 -33.54 218.50 -3.40 -36.94 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.33 Total: 3.22 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.72 Total: -8.93 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.89 Total: -54.78 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.19 Total: 1.65 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.71 Total: 18.60 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -33.54 -3.40 -36.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306601382.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.047 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds