Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47145 * 2 1 4 4 N 1.46497 * 109.47364 * 239.99772 * 2 1 3 5 5 C 1.36928 * 119.99959 * 85.00129 * 4 2 1 6 6 H 1.07999 * 120.00528 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00169 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00302 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99663 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47291 * 89.99886 * 9 7 5 11 11 H 1.48497 * 109.46982 * 209.99766 * 9 7 5 12 12 H 1.48499 * 109.47393 * 329.99766 * 9 7 5 13 13 C 1.50706 * 109.46717 * 119.99554 * 2 1 3 14 14 C 1.41375 * 126.80242 * 274.71259 * 13 2 1 15 15 C 1.35451 * 103.98258 * 179.88976 * 14 13 2 16 16 O 1.34043 * 106.44954 * 0.36769 * 15 14 13 17 17 N 1.20921 * 111.56080 * 359.74996 * 16 15 14 18 18 H 1.09002 * 109.46745 * 60.00296 * 1 2 3 19 19 H 1.08994 * 109.47580 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47528 * 300.00621 * 1 2 3 21 21 H 0.97001 * 119.99887 * 265.00038 * 4 2 1 22 22 H 0.97002 * 119.99897 * 179.97438 * 8 7 5 23 23 H 1.07997 * 128.01016 * 0.02562 * 14 13 2 24 24 H 1.08008 * 126.77801 * 180.13738 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8928 1.0404 -2.4241 7 6 2.6125 -0.6618 -3.5089 8 7 2.7378 -0.0054 -4.6428 9 14 3.0568 -2.4743 -3.4249 10 1 1.8597 -3.2928 -3.7449 11 1 4.1326 -2.7662 -4.4060 12 1 3.5312 -2.8049 -2.0571 13 6 2.0323 -0.7104 1.2306 14 6 2.2268 -0.1480 2.5130 15 6 2.6812 -1.1833 3.2589 16 8 2.7414 -2.2431 2.4404 17 7 2.3782 -1.9619 1.3218 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 2.2491 -1.6318 -1.1525 22 1 3.0619 -0.4626 -5.4346 23 1 2.0514 0.8706 2.8261 24 1 2.9466 -1.1588 4.3056 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306601382.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = 50.595488 kcal Electronic energy + Delta-G solvation = -10755.211289 eV Core-core repulsion = 8671.645971 eV Total energy + Delta-G solvation = -2083.565319 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.84273 -37.96843 -34.98024 -33.39485 -32.36279 -30.74355 -26.17221 -24.25894 -23.87571 -21.23267 -20.09143 -18.51831 -18.39128 -16.83464 -16.32950 -15.24120 -15.02544 -14.66382 -14.13558 -13.99384 -13.69589 -12.97169 -12.73863 -12.41002 -12.25317 -11.97162 -11.85039 -11.26452 -10.83471 -10.48694 -9.43302 -8.09119 -5.42462 0.75652 1.31974 1.32611 1.39203 1.42228 2.41617 2.60732 3.20845 3.28172 3.44224 4.01977 4.28094 4.43723 4.55998 4.60329 4.79956 4.96387 5.07967 5.22707 5.39668 5.69463 6.15270 6.98444 7.49631 7.77453 7.94364 9.11764 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.054840 B = 0.012997 C = 0.011306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.458088 B = 2153.750512 C = 2475.876688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.240 3.760 3 H 0.077 0.923 4 N -0.754 5.754 5 C -0.231 4.231 6 H 0.070 0.930 7 C -0.055 4.055 8 N -0.977 5.977 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.268 1.268 13 C -0.003 4.003 14 C -0.234 4.234 15 C -0.046 4.046 16 O 0.089 5.911 17 N -0.406 5.406 18 H 0.051 0.949 19 H 0.038 0.962 20 H 0.083 0.917 21 H 0.365 0.635 22 H 0.259 0.741 23 H 0.201 0.799 24 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 -1.441 18.504 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.131 3.869 3 H 0.095 0.905 4 N -0.397 5.397 5 C -0.362 4.362 6 H 0.088 0.912 7 C -0.247 4.247 8 N -0.627 5.627 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.162 4.162 14 C -0.256 4.256 15 C -0.127 4.127 16 O 0.023 5.977 17 N -0.111 5.111 18 H 0.070 0.930 19 H 0.057 0.943 20 H 0.102 0.898 21 H 0.198 0.802 22 H 0.068 0.932 23 H 0.218 0.782 24 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -1.479 -2.283 17.477 17.687 hybrid contribution 0.236 -0.204 -0.255 0.403 sum -1.242 -2.487 17.222 17.445 Atomic orbital electron populations 1.22207 0.95291 1.01152 1.02116 1.18866 0.93610 0.94405 0.79973 0.90506 1.42834 1.80024 1.09876 1.07006 1.19077 1.35403 0.94904 0.86777 0.91177 1.25336 1.02259 1.01761 0.95358 1.69841 1.54466 1.37387 1.00991 0.85569 0.78016 0.81858 0.77359 1.20447 1.21447 1.19393 1.24252 1.02177 0.90884 0.98875 1.23069 1.07745 1.03845 0.90898 1.26980 1.00623 0.84663 1.00456 1.84787 1.62141 1.36635 1.14102 1.73802 1.17667 1.18713 1.00908 0.92982 0.94264 0.89837 0.80164 0.93174 0.78195 0.71466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.47 71.98 0.68 -4.49 14 2 C 0.24 9.64 3.40 44.25 0.15 9.79 14 3 H 0.08 3.01 8.08 -2.38 -0.02 2.99 14 4 N -0.75 -38.34 4.92 -326.49 -1.61 -39.94 14 5 C -0.23 -13.62 10.41 84.04 0.87 -12.74 14 6 H 0.07 4.36 8.06 -2.91 -0.02 4.34 14 7 C -0.05 -3.37 5.50 84.86 0.47 -2.91 14 8 N -0.98 -63.75 13.97 21.65 0.30 -63.44 14 9 Si 0.94 48.98 27.74 68.60 1.90 50.89 14 10 H -0.28 -14.10 7.11 99.48 0.71 -13.40 14 11 H -0.29 -14.74 7.11 99.48 0.71 -14.03 14 12 H -0.27 -13.58 6.52 99.48 0.65 -12.93 14 13 C 0.00 -0.12 6.27 43.58 0.27 0.16 14 14 C -0.23 -5.44 11.12 22.40 0.25 -5.19 14 15 C -0.05 -0.86 12.30 67.18 0.83 -0.04 14 16 O 0.09 2.58 11.20 71.61 0.80 3.39 14 17 N -0.41 -15.24 11.37 -49.55 -0.56 -15.80 14 18 H 0.05 1.97 8.14 -2.39 -0.02 1.95 14 19 H 0.04 1.42 8.14 -2.39 -0.02 1.40 14 20 H 0.08 2.25 8.14 -2.39 -0.02 2.23 14 21 H 0.37 19.01 5.11 -92.71 -0.47 18.54 14 22 H 0.26 16.12 8.31 -92.71 -0.77 15.35 14 23 H 0.20 3.18 8.06 -2.91 -0.02 3.16 14 24 H 0.27 1.49 8.06 -2.91 -0.02 1.47 14 Total: -1.00 -74.29 218.50 5.03 -69.26 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.67 Total: 11.07 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 3.52 Total: -15.42 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -1.87 Total: -119.19 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.80 Total: 3.39 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.90 Total: 50.89 kcal Total: -74.29 5.03 -69.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306601382.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.860 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds