Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 N 1.46509 * 109.47190 * 119.99587 * 2 1 3 5 5 C 1.36933 * 119.99836 * 274.99988 * 4 2 1 6 6 H 1.08000 * 120.00284 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00021 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99726 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47352 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47011 * 120.00220 * 9 7 5 12 12 H 1.48505 * 109.46746 * 240.00073 * 9 7 5 13 13 C 1.50699 * 109.47611 * 239.99316 * 2 1 3 14 14 C 1.41383 * 126.79819 * 84.99536 * 13 2 1 15 15 C 1.35455 * 103.98301 * 180.02562 * 14 13 2 16 16 O 1.34036 * 106.44593 * 0.02562 * 15 14 13 17 17 N 1.20921 * 111.57107 * 359.97438 * 16 15 14 18 18 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47119 * 300.00532 * 1 2 3 20 20 H 1.08999 * 109.46407 * 60.00346 * 1 2 3 21 21 H 0.97001 * 119.99818 * 94.99602 * 4 2 1 22 22 H 0.96992 * 119.99950 * 179.97438 * 8 7 5 23 23 H 1.08001 * 128.00739 * 0.27353 * 14 13 2 24 24 H 1.08003 * 126.77421 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.1492 -0.0073 2.3758 6 1 1.8919 1.0405 2.4243 7 6 2.6114 -0.6617 3.5094 8 7 2.9244 -1.9388 3.4504 9 14 2.7891 0.2702 5.1186 10 1 2.3742 1.6822 4.9213 11 1 1.9280 -0.3585 6.1523 12 1 4.2059 0.2272 5.5615 13 6 2.0325 -0.7105 -1.2303 14 6 2.2217 -0.1496 -2.5143 15 6 2.6806 -1.1839 -3.2589 16 8 2.7398 -2.2438 -2.4405 17 7 2.3773 -1.9624 -1.3217 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 2.2490 -1.6318 1.1528 22 1 3.2477 -2.3960 4.2423 23 1 2.0454 0.8687 -2.8277 24 1 2.9457 -1.1596 -4.3056 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306601384.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = 71.629056 kcal Electronic energy + Delta-G solvation = -10695.085377 eV Core-core repulsion = 8612.432143 eV Total energy + Delta-G solvation = -2082.653235 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.46795 -36.05869 -33.19019 -31.55633 -30.80481 -28.35573 -24.39130 -22.74505 -22.55589 -19.69877 -17.75793 -17.06523 -16.74973 -15.10697 -14.22537 -13.71960 -13.39724 -12.85006 -12.65049 -12.25916 -11.51525 -11.00892 -10.85940 -10.68326 -10.60647 -10.03787 -9.71284 -9.59483 -9.23265 -8.88956 -6.97795 -5.73925 -3.04739 1.92259 2.75991 3.44538 3.49104 3.52144 3.67503 4.57126 4.74876 4.99139 5.50736 5.57027 5.66362 5.82450 5.95504 6.09851 6.26883 6.40929 6.61486 6.70082 7.00885 7.69693 8.42203 8.81614 9.55040 10.11046 10.47861 11.48302 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.071107 B = 0.010638 C = 0.009880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.676535 B = 2631.494884 C = 2833.300535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.244 3.756 3 H 0.067 0.933 4 N -0.721 5.721 5 C -0.244 4.244 6 H 0.073 0.927 7 C -0.012 4.012 8 N -0.927 5.927 9 Si 0.909 3.091 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.025 3.975 14 C -0.233 4.233 15 C -0.079 4.079 16 O 0.093 5.907 17 N -0.349 5.349 18 H 0.048 0.952 19 H 0.063 0.937 20 H 0.040 0.960 21 H 0.392 0.608 22 H 0.255 0.745 23 H 0.167 0.833 24 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 3.899 -12.313 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.084 0.916 4 N -0.363 5.363 5 C -0.375 4.375 6 H 0.091 0.909 7 C -0.208 4.208 8 N -0.575 5.575 9 Si 0.740 3.260 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C -0.135 4.135 14 C -0.254 4.254 15 C -0.161 4.161 16 O 0.027 5.973 17 N -0.052 5.052 18 H 0.067 0.933 19 H 0.082 0.918 20 H 0.059 0.941 21 H 0.227 0.773 22 H 0.065 0.935 23 H 0.184 0.816 24 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.928 2.985 -11.285 11.831 hybrid contribution 0.117 0.997 0.375 1.072 sum -1.811 3.982 -10.910 11.754 Atomic orbital electron populations 1.22405 0.97695 1.01400 1.00445 1.18680 0.92196 0.94197 0.81629 0.91561 1.42431 1.78010 1.11192 1.04652 1.19286 1.37165 0.94002 0.87093 0.90900 1.24792 1.01896 0.95992 0.98156 1.69710 1.50331 1.08681 1.28785 0.86095 0.77317 0.78749 0.83877 1.20482 1.21809 1.21842 1.24368 1.00850 0.90474 0.97798 1.22698 1.07777 1.01778 0.93183 1.25910 1.04061 0.87116 0.99043 1.84876 1.62637 1.35195 1.14622 1.73870 1.15290 1.17635 0.98428 0.93262 0.91797 0.94135 0.77294 0.93478 0.81578 0.77395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.47 37.16 0.35 -2.66 14 2 C 0.24 5.23 3.40 -69.08 -0.23 5.00 14 3 H 0.07 1.36 8.08 -51.93 -0.42 0.94 14 4 N -0.72 -19.43 5.11 -54.54 -0.28 -19.71 14 5 C -0.24 -7.01 9.93 -15.06 -0.15 -7.16 14 6 H 0.07 1.98 7.83 -52.49 -0.41 1.57 14 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 14 8 N -0.93 -29.22 13.06 55.49 0.72 -28.50 14 9 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 14 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 14 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 14 13 C 0.03 0.50 6.27 -82.10 -0.52 -0.02 14 14 C -0.23 -3.38 11.12 -39.38 -0.44 -3.82 14 15 C -0.08 -1.01 12.30 29.74 0.37 -0.64 14 16 O 0.09 1.58 11.20 17.19 0.19 1.78 14 17 N -0.35 -7.29 11.37 33.42 0.38 -6.91 14 18 H 0.05 0.98 8.14 -51.93 -0.42 0.56 14 19 H 0.06 1.24 8.14 -51.93 -0.42 0.82 14 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 14 21 H 0.39 11.55 7.25 -40.82 -0.30 11.26 14 22 H 0.26 7.71 8.31 -40.82 -0.34 7.37 14 23 H 0.17 1.86 8.06 -52.49 -0.42 1.44 14 24 H 0.21 1.49 8.06 -52.48 -0.42 1.07 14 LS Contribution 221.62 15.07 3.34 3.34 Total: -1.00 -33.16 221.62 -3.76 -36.92 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.38 Total: 5.06 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.72 Total: -9.75 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.83 Total: -55.12 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.19 Total: 1.78 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -33.16 -3.76 -36.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306601384.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.550 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds