Wall clock time and date at job start Mon Mar 30 2020 01:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34086 * 126.10661 * 2 1 4 4 O 1.35106 * 107.27699 * 179.78338 * 3 2 1 5 5 C 1.34204 * 107.75175 * 0.38088 * 4 3 2 6 6 N 1.38167 * 125.71552 * 179.87503 * 5 4 3 7 7 C 1.46499 * 119.99761 * 359.69597 * 6 5 4 8 8 C 1.50701 * 109.46992 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 N 1.31054 * 108.57605 * 359.61447 * 5 4 3 17 17 H 1.09002 * 109.47156 * 270.00530 * 1 2 3 18 18 H 1.09004 * 109.46868 * 30.00215 * 1 2 3 19 19 H 1.09004 * 109.47195 * 150.00306 * 1 2 3 20 20 H 1.07997 * 126.35892 * 0.04101 * 3 2 1 21 21 H 0.97000 * 119.99819 * 179.68870 * 6 5 4 22 22 H 1.09002 * 109.47391 * 59.99715 * 7 6 5 23 23 H 1.09001 * 109.46813 * 299.99771 * 7 6 5 24 24 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.0833 0.0000 4 8 3.5759 0.6473 0.0049 5 6 3.5507 -0.6945 -0.0007 6 7 4.6571 -1.5220 -0.0008 7 6 6.0036 -0.9447 -0.0011 8 6 7.0252 -2.0526 -0.0004 9 1 6.7037 -3.0836 -0.0003 10 6 8.3703 -1.7499 -0.0011 11 7 8.7618 -0.4944 -0.0018 12 14 9.6366 -3.1232 -0.0010 13 1 9.9716 -3.4876 -1.4011 14 1 10.8639 -2.6648 0.6984 15 1 9.0811 -4.3087 0.6996 16 7 2.3008 -1.0886 -0.0004 17 1 -0.3633 0.0001 1.0277 18 1 -0.3633 0.8900 -0.5139 19 1 -0.3634 -0.8900 -0.5138 20 1 1.9718 2.1131 0.0006 21 1 4.5424 -2.4852 -0.0005 22 1 6.1352 -0.3291 0.8888 23 1 6.1348 -0.3294 -0.8912 24 1 9.7082 -0.2815 -0.0019 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306668050.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:50 Heat of formation + Delta-G solvation = -4.709533 kcal Electronic energy + Delta-G solvation = -10386.336439 eV Core-core repulsion = 8300.372915 eV Total energy + Delta-G solvation = -2085.963524 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.97399 -37.25176 -35.91901 -34.69136 -31.84913 -29.12047 -27.49395 -24.81411 -22.95122 -21.63654 -19.31854 -18.06981 -17.67143 -16.94521 -16.74327 -15.75897 -14.78753 -14.69401 -14.14437 -14.02023 -13.78512 -12.97733 -12.81175 -12.76604 -12.21895 -12.13801 -11.54556 -11.32483 -11.00622 -10.55370 -8.57261 -8.33928 -6.49360 0.82272 1.42468 1.45285 1.51015 1.58274 1.90191 2.34490 2.69919 3.01920 3.91347 4.13361 4.52501 4.82864 4.87937 5.00330 5.06869 5.13177 5.13368 5.47177 5.57219 5.76811 5.95260 6.56037 6.69402 7.14714 7.27294 8.78132 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.122179 B = 0.008134 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 229.117236 B = 3441.497091 C = 3650.167143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.004 4.004 3 C -0.137 4.137 4 O -0.248 6.248 5 C 0.448 3.552 6 N -0.671 5.671 7 C 0.274 3.726 8 C -0.559 4.559 9 H 0.079 0.921 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.985 3.015 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.260 1.260 16 N -0.578 5.578 17 H 0.085 0.915 18 H 0.102 0.898 19 H 0.070 0.930 20 H 0.249 0.751 21 H 0.427 0.573 22 H -0.003 1.003 23 H -0.003 1.003 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 1.138 -0.004 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.122 4.122 3 C -0.207 4.207 4 O -0.136 6.136 5 C 0.149 3.851 6 N -0.320 5.320 7 C 0.152 3.848 8 C -0.596 4.596 9 H 0.097 0.903 10 C -0.190 4.190 11 N -0.564 5.564 12 Si 0.808 3.192 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.184 1.184 16 N -0.321 5.321 17 H 0.103 0.897 18 H 0.120 0.880 19 H 0.089 0.911 20 H 0.265 0.735 21 H 0.267 0.733 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.757 0.838 0.002 10.790 hybrid contribution 1.137 0.071 0.002 1.139 sum -9.620 0.909 0.003 9.663 Atomic orbital electron populations 1.20193 0.83656 1.04258 1.03736 1.22283 0.99505 0.87549 1.02867 1.25064 0.77890 1.02159 1.15552 1.84457 1.33192 1.21961 1.74017 1.22117 0.88813 0.78838 0.95329 1.43942 1.01145 1.06914 1.80049 1.18769 0.76828 0.94510 0.94733 1.21492 0.91275 0.93407 1.53475 0.90252 1.25969 1.00724 0.98715 0.93639 1.70087 1.17229 1.19535 1.49572 0.85147 0.77187 0.78216 0.78640 1.19562 1.20553 1.18419 1.70782 0.97936 1.31497 1.31892 0.89663 0.87976 0.91148 0.73484 0.73266 0.98469 0.98470 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.42 71.24 0.74 -0.53 14 2 C 0.00 -0.11 7.10 41.17 0.29 0.18 14 3 C -0.14 -4.38 12.07 66.87 0.81 -3.57 14 4 O -0.25 -10.65 10.50 -9.62 -0.10 -10.76 14 5 C 0.45 19.95 8.98 179.08 1.61 21.56 14 6 N -0.67 -31.03 5.69 -465.21 -2.65 -33.67 14 7 C 0.27 14.73 5.80 85.63 0.50 15.22 14 8 C -0.56 -30.41 9.28 25.60 0.24 -30.17 14 9 H 0.08 4.03 7.60 -2.91 -0.02 4.00 14 10 C 0.01 0.54 5.46 84.66 0.46 1.00 14 11 N -0.93 -54.02 13.29 21.45 0.28 -53.73 14 12 Si 0.99 42.07 29.54 68.60 2.03 44.09 14 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 14 14 H -0.28 -11.72 7.11 99.48 0.71 -11.01 14 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 14 16 N -0.58 -23.55 11.34 -301.93 -3.43 -26.97 14 17 H 0.08 1.53 8.14 -2.39 -0.02 1.51 14 18 H 0.10 1.46 8.14 -2.39 -0.02 1.44 14 19 H 0.07 1.49 8.14 -2.38 -0.02 1.47 14 20 H 0.25 5.13 8.06 -2.91 -0.02 5.11 14 21 H 0.43 18.05 8.44 -92.71 -0.78 17.27 14 22 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 14 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 14 24 H 0.27 14.73 8.31 -92.71 -0.77 13.96 14 Total: -1.00 -65.48 223.91 1.21 -64.27 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.42 Total: 13.08 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.65 Total: 3.69 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -5.79 Total: -114.38 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.10 Total: -10.76 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -65.48 1.21 -64.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306668050.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.561 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds