Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47075 * 90.02253 * 6 5 4 8 8 C 1.36935 * 120.00133 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99694 * 359.97438 * 8 7 6 10 10 C 1.38808 * 120.00132 * 180.02562 * 8 7 6 11 11 N 1.31622 * 119.99762 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00279 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47253 * 89.99471 * 12 10 8 14 14 H 1.48495 * 109.47471 * 209.99821 * 12 10 8 15 15 H 1.48507 * 109.46783 * 329.99864 * 12 10 8 16 16 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 17 17 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 18 18 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 19 19 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 20 20 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 21 21 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 22 22 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 23 23 H 0.97005 * 119.99641 * 0.02562 * 7 6 5 24 24 H 0.97004 * 119.99728 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1898 -1.8407 1.3815 8 6 6.2834 -2.6259 1.6317 9 1 6.8536 -3.0350 0.8107 10 6 6.6585 -2.8970 2.9404 11 7 5.9632 -2.3988 3.9408 12 14 8.1499 -3.9687 3.2817 13 1 9.3619 -3.1157 3.3734 14 1 7.9561 -4.6930 4.5635 15 1 8.3172 -4.9496 2.1793 16 8 2.2872 -1.0891 0.0005 17 1 -0.3634 0.0005 1.0276 18 1 -0.3633 0.8897 -0.5143 19 1 -0.3633 -0.8902 -0.5135 20 1 4.4157 1.3161 0.0011 21 1 4.5695 -2.4896 -0.5140 22 1 5.6081 -1.0440 -0.5130 23 1 4.6774 -1.4735 2.1188 24 1 6.2256 -2.5879 4.8553 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307315687.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = 5.401717 kcal Electronic energy + Delta-G solvation = -10437.111471 eV Core-core repulsion = 8351.586403 eV Total energy + Delta-G solvation = -2085.525068 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.30269 -36.87000 -35.75691 -33.97513 -32.40491 -29.55387 -26.55371 -24.59120 -23.16802 -21.97749 -19.48296 -17.90178 -17.71609 -16.65673 -15.91853 -15.34358 -15.16661 -14.63391 -14.12578 -13.84743 -13.64201 -13.22342 -12.97093 -12.78004 -12.29405 -12.15003 -11.93225 -11.61588 -11.04269 -9.73057 -9.14847 -8.00052 -5.33598 0.42352 1.48317 1.51068 1.59457 1.65046 1.73836 2.54859 3.17734 3.33992 3.85905 4.03189 4.10889 4.33940 4.57620 4.65527 4.73739 4.76284 5.03473 5.14071 5.41983 5.44639 6.17883 6.70414 7.25190 7.90837 8.17812 9.23344 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.090952 B = 0.008602 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.780036 B = 3254.215905 C = 3327.956090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.180 3.820 3 N -0.511 5.511 4 C -0.037 4.037 5 C -0.057 4.057 6 C 0.235 3.765 7 N -0.744 5.744 8 C -0.253 4.253 9 H 0.088 0.912 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.984 3.016 13 H -0.283 1.283 14 H -0.296 1.296 15 H -0.265 1.265 16 O -0.214 6.214 17 H 0.105 0.895 18 H 0.118 0.882 19 H 0.107 0.893 20 H 0.197 0.803 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.372 0.628 24 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 3.208 -8.721 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.027 4.027 3 N -0.242 5.242 4 C -0.175 4.175 5 C -0.109 4.109 6 C 0.109 3.891 7 N -0.388 5.388 8 C -0.384 4.384 9 H 0.106 0.894 10 C -0.268 4.268 11 N -0.621 5.621 12 Si 0.812 3.188 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.189 1.189 16 O -0.102 6.102 17 H 0.124 0.876 18 H 0.136 0.864 19 H 0.126 0.874 20 H 0.214 0.786 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.204 0.796 24 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.183 3.658 -8.797 12.559 hybrid contribution 0.964 -0.957 0.798 1.575 sum -7.219 2.701 -7.999 11.108 Atomic orbital electron populations 1.20553 0.77657 1.06730 1.06056 1.27502 0.98354 0.78111 0.98704 1.70429 1.02264 1.31130 1.20352 1.23331 0.95585 0.93124 1.05483 1.23798 0.83681 0.95952 1.07516 1.19221 0.87163 0.94935 0.87784 1.42589 1.33500 1.60930 1.01757 1.19699 1.03685 1.22474 0.92530 0.89397 1.25733 1.02784 1.02870 0.95380 1.69860 1.43010 1.50770 0.98458 0.84991 0.78481 0.78190 0.77134 1.21018 1.22269 1.18938 1.84404 1.17110 1.38660 1.70040 0.87616 0.86401 0.87403 0.78644 0.93852 0.90546 0.79627 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.94 10.51 71.24 0.75 -0.20 14 2 C 0.18 5.64 8.34 88.34 0.74 6.37 14 3 N -0.51 -17.94 11.29 -303.83 -3.43 -21.37 14 4 C -0.04 -1.34 11.80 83.39 0.98 -0.35 14 5 C -0.06 -2.20 6.75 24.79 0.17 -2.03 14 6 C 0.23 9.71 6.81 85.63 0.58 10.29 14 7 N -0.74 -39.04 5.59 -347.17 -1.94 -40.98 14 8 C -0.25 -14.10 9.99 84.03 0.84 -13.27 14 9 H 0.09 4.55 7.83 -2.91 -0.02 4.53 14 10 C -0.08 -4.34 5.50 84.86 0.47 -3.87 14 11 N -0.97 -60.30 13.06 21.65 0.28 -60.02 14 12 Si 0.98 45.71 29.55 68.60 2.03 47.74 14 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 14 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 14 15 H -0.26 -11.48 7.11 99.48 0.71 -10.78 14 16 O -0.21 -8.01 10.78 -3.79 -0.04 -8.05 14 17 H 0.11 1.63 8.14 -2.39 -0.02 1.61 14 18 H 0.12 1.63 8.14 -2.39 -0.02 1.61 14 19 H 0.11 1.46 8.14 -2.38 -0.02 1.44 14 20 H 0.20 6.23 8.06 -2.91 -0.02 6.21 14 21 H 0.04 1.75 8.14 -2.39 -0.02 1.73 14 22 H 0.08 2.86 8.14 -2.39 -0.02 2.84 14 23 H 0.37 21.37 7.66 -92.70 -0.71 20.66 14 24 H 0.25 15.15 8.31 -92.71 -0.77 14.38 14 Total: -1.00 -68.74 223.87 1.92 -66.83 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.50 Total: 18.90 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 4.53 Total: -3.05 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.09 Total: -122.37 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.04 Total: -8.05 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.74 1.92 -66.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307315687.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.227 kcal (2) G-P(sol) polarization free energy of solvation -68.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds