Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27584 * 119.41286 * 2 1 4 4 N 1.39824 * 121.43136 * 180.10948 * 3 2 1 5 5 C 1.37006 * 119.81130 * 199.28392 * 4 3 2 6 6 H 1.07996 * 120.00173 * 180.02562 * 5 4 3 7 7 C 1.38894 * 119.99771 * 0.02562 * 5 4 3 8 8 N 1.31415 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46855 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46870 * 120.00237 * 9 7 5 12 12 H 1.48494 * 109.47193 * 240.00385 * 9 7 5 13 13 C 1.34801 * 120.38265 * 19.26915 * 4 3 2 14 14 O 1.21275 * 120.23209 * 179.52306 * 13 4 3 15 15 C 1.50825 * 119.53366 * 359.53973 * 13 4 3 16 16 C 1.50519 * 119.41193 * 179.72500 * 2 1 3 17 17 H 1.09002 * 109.47152 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46980 * 240.00080 * 1 2 3 19 19 H 1.09004 * 109.47113 * 120.00061 * 1 2 3 20 20 H 0.96999 * 119.99807 * 180.02562 * 8 7 5 21 21 H 1.09001 * 109.53868 * 87.04218 * 15 13 4 22 22 H 1.09004 * 109.53852 * 207.28692 * 15 13 4 23 23 H 1.08999 * 109.44593 * 265.88474 * 16 2 1 24 24 H 1.08997 * 109.44466 * 25.79915 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1336 1.1114 0.0000 4 7 3.5310 1.1606 -0.0023 5 6 4.1728 2.3056 0.3903 6 1 5.2520 2.3472 0.3893 7 6 3.4355 3.4129 0.7896 8 7 2.1223 3.3622 0.7912 9 14 4.3105 4.9739 1.3255 10 1 5.7793 4.7742 1.2342 11 1 3.9079 6.0960 0.4400 12 1 3.9401 5.2924 2.7278 13 6 4.2504 0.0880 -0.3882 14 8 5.4621 0.1365 -0.3974 15 6 3.5376 -1.1729 -0.8090 16 6 2.2462 -1.3112 0.0063 17 1 -0.3633 1.0277 0.0005 18 1 -0.3633 -0.5138 0.8900 19 1 -0.3633 -0.5139 -0.8900 20 1 1.6075 4.1356 1.0697 21 1 3.2982 -1.1193 -1.8710 22 1 4.1792 -2.0341 -0.6218 23 1 2.4887 -1.5861 1.0328 24 1 1.6183 -2.0838 -0.4373 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307328006.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = 15.487170 kcal Electronic energy + Delta-G solvation = -11057.030341 eV Core-core repulsion = 8971.942611 eV Total energy + Delta-G solvation = -2085.087730 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.23860 -36.07919 -33.98403 -31.36964 -30.85272 -27.70462 -25.09798 -23.46525 -20.76105 -18.34610 -16.15495 -15.95655 -14.89485 -14.72774 -14.19596 -13.25137 -13.01630 -12.89392 -12.20080 -11.75990 -11.59993 -11.40947 -11.05224 -10.90957 -10.56032 -10.29238 -10.23371 -9.17961 -8.92902 -8.16331 -7.59297 -6.10446 -3.82686 2.82374 3.20347 3.27654 3.34212 3.92332 4.07251 4.43896 5.07975 5.29997 5.38828 5.46900 5.71539 5.93425 6.09350 6.14967 6.18042 6.30269 6.44711 6.94717 7.40197 7.62376 8.21359 8.59650 9.13456 9.63025 9.95572 10.83918 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.046177 B = 0.017369 C = 0.012893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.218560 B = 1611.686059 C = 2171.237085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.001 3.999 3 N -0.140 5.140 4 N -0.287 5.287 5 C -0.327 4.327 6 H 0.115 0.885 7 C 0.043 3.957 8 N -0.820 5.820 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.421 3.579 14 O -0.576 6.576 15 C -0.134 4.134 16 C -0.107 4.107 17 H 0.075 0.925 18 H 0.063 0.937 19 H 0.061 0.939 20 H 0.261 0.739 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -5.509 -0.761 7.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.191 4.191 3 N 0.051 4.949 4 N -0.092 5.092 5 C -0.454 4.454 6 H 0.133 0.867 7 C -0.166 4.166 8 N -0.455 5.455 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.211 3.789 14 O -0.457 6.457 15 C -0.174 4.174 16 C -0.148 4.148 17 H 0.094 0.906 18 H 0.082 0.918 19 H 0.080 0.920 20 H 0.071 0.929 21 H 0.102 0.898 22 H 0.110 0.890 23 H 0.091 0.909 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.314 -4.386 -0.718 6.194 hybrid contribution 0.503 -0.097 0.257 0.574 sum -3.811 -4.483 -0.461 5.902 Atomic orbital electron populations 1.20324 0.88692 1.03396 1.00872 1.24729 0.97435 0.90721 1.06190 1.74868 0.92048 1.22096 1.05844 1.44880 0.99628 1.11657 1.53061 1.19740 0.92553 0.88369 1.44767 0.86721 1.25357 0.95455 0.99079 0.96717 1.70234 1.04348 1.29082 1.41801 0.85918 0.79749 0.81202 0.78172 1.19157 1.20491 1.20591 1.20645 0.88093 0.85558 0.84606 1.90522 1.13761 1.83444 1.58015 1.21684 0.97083 0.97574 1.01108 1.20977 0.95685 0.97321 1.00792 0.90566 0.91821 0.92040 0.92875 0.89790 0.89016 0.90851 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.17 36.01 0.37 -0.80 14 2 C 0.00 0.03 6.86 -79.17 -0.54 -0.52 14 3 N -0.14 -3.64 8.46 35.32 0.30 -3.34 14 4 N -0.29 -8.11 3.58 -10.96 -0.04 -8.15 14 5 C -0.33 -9.73 9.63 -15.00 -0.14 -9.87 14 6 H 0.12 3.48 7.15 -52.49 -0.38 3.11 14 7 C 0.04 1.19 5.49 -17.49 -0.10 1.09 14 8 N -0.82 -23.17 11.29 55.49 0.63 -22.55 14 9 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 14 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 13 C 0.42 11.08 7.51 -10.91 -0.08 11.00 14 14 O -0.58 -16.81 16.69 5.56 0.09 -16.72 14 15 C -0.13 -2.60 6.24 -27.64 -0.17 -2.77 14 16 C -0.11 -1.85 6.04 -27.79 -0.17 -2.02 14 17 H 0.08 1.32 8.09 -51.93 -0.42 0.90 14 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 14 19 H 0.06 0.79 8.14 -51.93 -0.42 0.37 14 20 H 0.26 6.85 8.31 -40.82 -0.34 6.51 14 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 14 22 H 0.09 1.58 8.14 -51.93 -0.42 1.16 14 23 H 0.07 1.26 8.14 -51.93 -0.42 0.83 14 24 H 0.08 1.05 8.08 -51.93 -0.42 0.63 14 LS Contribution 215.18 15.07 3.24 3.24 Total: -1.00 -33.54 215.18 -4.10 -37.65 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -2.46 Total: -2.53 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.84 Total: -3.89 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.89 Total: -34.03 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.09 Total: -16.72 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -33.54 -4.10 -37.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328006.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.133 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds