Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27584 * 119.41286 * 2 1 4 4 N 1.39824 * 121.43136 * 180.10948 * 3 2 1 5 5 C 1.37006 * 119.81130 * 199.28392 * 4 3 2 6 6 H 1.07996 * 120.00173 * 180.02562 * 5 4 3 7 7 C 1.38894 * 119.99771 * 0.02562 * 5 4 3 8 8 N 1.31415 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46855 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46870 * 120.00237 * 9 7 5 12 12 H 1.48494 * 109.47193 * 240.00385 * 9 7 5 13 13 C 1.34801 * 120.38265 * 19.26915 * 4 3 2 14 14 O 1.21275 * 120.23209 * 179.52306 * 13 4 3 15 15 C 1.50825 * 119.53366 * 359.53973 * 13 4 3 16 16 C 1.50519 * 119.41193 * 179.72500 * 2 1 3 17 17 H 1.09002 * 109.47152 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46980 * 240.00080 * 1 2 3 19 19 H 1.09004 * 109.47113 * 120.00061 * 1 2 3 20 20 H 0.96999 * 119.99807 * 180.02562 * 8 7 5 21 21 H 1.09001 * 109.53868 * 87.04218 * 15 13 4 22 22 H 1.09004 * 109.53852 * 207.28692 * 15 13 4 23 23 H 1.08999 * 109.44593 * 265.88474 * 16 2 1 24 24 H 1.08997 * 109.44466 * 25.79915 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1336 1.1114 0.0000 4 7 3.5310 1.1606 -0.0023 5 6 4.1728 2.3056 0.3903 6 1 5.2520 2.3472 0.3893 7 6 3.4355 3.4129 0.7896 8 7 2.1223 3.3622 0.7912 9 14 4.3105 4.9739 1.3255 10 1 5.7793 4.7742 1.2342 11 1 3.9079 6.0960 0.4400 12 1 3.9401 5.2924 2.7278 13 6 4.2504 0.0880 -0.3882 14 8 5.4621 0.1365 -0.3974 15 6 3.5376 -1.1729 -0.8090 16 6 2.2462 -1.3112 0.0063 17 1 -0.3633 1.0277 0.0005 18 1 -0.3633 -0.5138 0.8900 19 1 -0.3633 -0.5139 -0.8900 20 1 1.6075 4.1356 1.0697 21 1 3.2982 -1.1193 -1.8710 22 1 4.1792 -2.0341 -0.6218 23 1 2.4887 -1.5861 1.0328 24 1 1.6183 -2.0838 -0.4373 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307328006.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = -8.807381 kcal Electronic energy + Delta-G solvation = -11058.083832 eV Core-core repulsion = 8971.942611 eV Total energy + Delta-G solvation = -2086.141220 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.07775 -37.95503 -35.87717 -33.34508 -32.46720 -29.38088 -26.95190 -25.16269 -22.54006 -20.29777 -17.99281 -17.67338 -16.89544 -16.54662 -16.02951 -14.99198 -14.61986 -14.43739 -13.75160 -13.50186 -13.20230 -13.04253 -12.74900 -12.53875 -12.41572 -12.12396 -12.09722 -10.98738 -10.89555 -10.01121 -9.54967 -8.17044 -5.99898 1.09454 1.37058 1.39434 1.52392 2.09251 2.20527 2.54037 3.21584 3.49184 3.87719 3.98106 4.30101 4.49193 4.76227 4.84267 4.93252 5.00383 5.10634 5.35237 5.57411 5.76083 6.12381 6.62197 7.05407 7.64699 8.08916 8.75629 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.046177 B = 0.017369 C = 0.012893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.218560 B = 1611.686059 C = 2171.237085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.032 3.968 3 N -0.209 5.209 4 N -0.309 5.309 5 C -0.372 4.372 6 H 0.087 0.913 7 C 0.005 3.995 8 N -0.838 5.838 9 Si 0.994 3.006 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.266 1.266 13 C 0.393 3.607 14 O -0.631 6.631 15 C -0.123 4.123 16 C -0.106 4.106 17 H 0.053 0.947 18 H 0.096 0.904 19 H 0.104 0.896 20 H 0.266 0.734 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -6.729 -0.713 9.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.161 4.161 3 N -0.015 5.015 4 N -0.113 5.113 5 C -0.499 4.499 6 H 0.105 0.895 7 C -0.202 4.202 8 N -0.471 5.471 9 Si 0.816 3.184 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.191 1.191 13 C 0.185 3.815 14 O -0.517 6.517 15 C -0.163 4.163 16 C -0.145 4.145 17 H 0.072 0.928 18 H 0.115 0.885 19 H 0.122 0.878 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.133 0.867 23 H 0.098 0.902 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.415 -5.602 -0.670 8.543 hybrid contribution 0.968 0.152 0.236 1.008 sum -5.447 -5.451 -0.434 7.718 Atomic orbital electron populations 1.20565 0.85038 1.03224 1.04452 1.25913 0.99674 0.91191 0.99292 1.74895 0.90604 1.25209 1.10842 1.45012 1.01160 1.11657 1.53452 1.19707 0.92008 0.90663 1.47530 0.89516 1.26205 0.96327 1.01657 0.95995 1.70352 1.05318 1.30089 1.41343 0.84910 0.78081 0.77019 0.78420 1.19810 1.19096 1.19101 1.21921 0.88072 0.87358 0.84176 1.90460 1.15962 1.84681 1.60618 1.21713 0.97871 0.94436 1.02323 1.21147 0.94955 0.96985 1.01441 0.92758 0.88519 0.87757 0.92389 0.87975 0.86714 0.90237 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.17 71.24 0.72 -1.28 14 2 C 0.03 1.23 6.86 46.54 0.32 1.54 14 3 N -0.21 -10.83 8.46 -41.54 -0.35 -11.18 14 4 N -0.31 -18.03 3.58 -306.96 -1.10 -19.13 14 5 C -0.37 -23.26 9.63 84.04 0.81 -22.45 14 6 H 0.09 5.68 7.15 -2.91 -0.02 5.66 14 7 C 0.01 0.29 5.49 84.91 0.47 0.75 14 8 N -0.84 -47.91 11.29 21.65 0.24 -47.67 14 9 Si 0.99 44.70 29.55 68.60 2.03 46.73 14 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 14 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 14 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 14 13 C 0.39 21.22 7.51 87.69 0.66 21.87 14 14 O -0.63 -38.73 16.69 -3.01 -0.05 -38.78 14 15 C -0.12 -4.52 6.24 30.00 0.19 -4.33 14 16 C -0.11 -3.18 6.04 29.91 0.18 -3.00 14 17 H 0.05 1.74 8.09 -2.39 -0.02 1.72 14 18 H 0.10 2.08 8.14 -2.39 -0.02 2.06 14 19 H 0.10 2.04 8.14 -2.38 -0.02 2.02 14 20 H 0.27 14.01 8.31 -92.71 -0.77 13.24 14 21 H 0.10 3.36 8.14 -2.39 -0.02 3.34 14 22 H 0.11 3.66 8.14 -2.38 -0.02 3.64 14 23 H 0.08 2.40 8.14 -2.39 -0.02 2.39 14 24 H 0.14 2.65 8.08 -2.39 -0.02 2.64 14 Total: -1.00 -78.45 215.18 5.31 -73.14 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.19 Total: 3.77 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 3.35 Total: -6.89 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -1.21 Total: -77.97 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.05 Total: -38.78 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -78.45 5.31 -73.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328006.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.335 kcal (2) G-P(sol) polarization free energy of solvation -78.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds