Wall clock time and date at job start Mon Mar 30 2020 01:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46500 * 109.46837 * 90.03047 * 7 6 5 9 9 C 1.36936 * 120.00295 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99717 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00495 * 179.97438 * 9 8 7 12 12 N 1.31619 * 120.00033 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99705 * 359.97438 * 11 9 8 14 14 H 1.48509 * 109.46861 * 90.00306 * 13 11 9 15 15 H 1.48504 * 109.47314 * 209.99775 * 13 11 9 16 16 H 1.48497 * 109.47688 * 330.00555 * 13 11 9 17 17 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 18 18 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 19 19 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 20 20 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 21 21 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 22 22 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 23 23 H 0.97007 * 120.00360 * 359.97438 * 8 7 6 24 24 H 0.97006 * 119.99610 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8578 -3.0451 1.3754 9 6 1.5061 -4.3455 1.6213 10 1 1.3212 -5.0197 0.7981 11 6 1.3882 -4.7974 2.9284 12 7 1.0506 -6.0475 3.1646 13 14 1.7101 -3.6318 4.3522 14 1 0.4441 -2.9560 4.7345 15 1 2.2314 -4.3990 5.5119 16 1 2.7103 -2.6137 3.9422 17 1 -0.3633 -0.0005 1.0277 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3634 -0.8898 -0.5141 20 1 2.0576 2.1094 0.0004 21 1 1.0275 -2.6837 -0.5163 22 1 2.7453 -3.1500 -0.5220 23 1 2.0249 -2.4398 2.1148 24 1 0.9686 -6.3633 4.0781 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708446209.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:00 Heat of formation + Delta-G solvation = 47.564391 kcal Electronic energy + Delta-G solvation = -10650.978413 eV Core-core repulsion = 8567.281656 eV Total energy + Delta-G solvation = -2083.696757 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 182.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.95264 -37.50426 -35.46341 -33.70294 -32.77498 -29.10709 -28.37296 -24.55005 -22.57436 -22.15114 -20.00982 -18.60870 -18.24796 -16.68530 -16.16182 -15.59298 -15.02818 -14.44907 -14.11199 -13.98413 -13.86583 -13.34696 -12.94846 -12.89708 -12.26131 -12.02800 -11.89240 -11.10513 -10.99784 -10.25243 -9.44232 -8.09816 -5.45699 0.61927 1.17727 1.32232 1.35242 1.42469 2.41421 2.49106 3.16762 3.23798 3.62604 3.72953 4.05703 4.27901 4.57063 4.72363 4.82564 4.89509 4.93928 5.05781 5.39771 5.65103 6.12687 6.95552 7.37884 7.68582 7.89485 9.11052 Molecular weight = 182.08amu Principal moments of inertia in cm(-1) A = 0.054501 B = 0.011612 C = 0.011385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.626632 B = 2410.770412 C = 2458.689400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.204 4.204 3 C -0.050 4.050 4 O 0.102 5.898 5 N -0.392 5.392 6 C -0.012 4.012 7 C 0.232 3.768 8 N -0.750 5.750 9 C -0.241 4.241 10 H 0.065 0.935 11 C -0.053 4.053 12 N -0.977 5.977 13 Si 0.953 3.047 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.269 1.269 17 H 0.070 0.930 18 H 0.105 0.895 19 H 0.063 0.937 20 H 0.270 0.730 21 H 0.064 0.936 22 H 0.031 0.969 23 H 0.364 0.636 24 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 18.048 -5.746 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C -0.131 4.131 4 O 0.034 5.966 5 N -0.094 5.094 6 C -0.169 4.169 7 C 0.105 3.895 8 N -0.396 5.396 9 C -0.372 4.372 10 H 0.083 0.917 11 C -0.246 4.246 12 N -0.626 5.626 13 Si 0.781 3.219 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.195 1.195 17 H 0.089 0.911 18 H 0.123 0.877 19 H 0.082 0.918 20 H 0.286 0.714 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.196 0.804 24 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.355 17.243 -5.829 18.205 hybrid contribution -0.505 0.055 0.964 1.090 sum -0.151 17.299 -4.865 17.970 Atomic orbital electron populations 1.20166 0.85671 1.04187 1.03082 1.21728 1.00097 0.90903 1.08111 1.26666 0.81405 1.02617 1.02389 1.84759 1.30716 1.14620 1.66517 1.73862 1.23330 0.92415 1.19836 1.23822 0.89320 0.99159 1.04648 1.18917 0.98931 0.84991 0.86643 1.42580 1.85065 1.09428 1.02560 1.19015 1.38078 0.86895 0.93185 0.91740 1.25419 1.01773 0.97660 0.99716 1.69862 1.55926 1.16492 1.20351 0.85443 0.78591 0.78599 0.79313 1.19366 1.21608 1.19479 0.91088 0.87683 0.91809 0.71415 0.91860 0.95145 0.80356 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.37 71.24 0.74 -0.83 14 2 C -0.20 -5.45 6.32 -19.74 -0.12 -5.57 14 3 C -0.05 -1.01 12.26 67.17 0.82 -0.19 14 4 O 0.10 2.90 11.20 71.60 0.80 3.70 14 5 N -0.39 -14.30 12.07 -49.55 -0.60 -14.90 14 6 C -0.01 -0.43 6.70 43.58 0.29 -0.13 14 7 C 0.23 9.77 6.76 85.63 0.58 10.35 14 8 N -0.75 -37.63 5.40 -347.18 -1.87 -39.50 14 9 C -0.24 -14.21 10.47 84.03 0.88 -13.33 14 10 H 0.06 4.08 8.06 -2.91 -0.02 4.06 14 11 C -0.05 -3.21 5.50 84.86 0.47 -2.74 14 12 N -0.98 -63.04 13.97 21.65 0.30 -62.74 14 13 Si 0.95 46.92 27.73 68.60 1.90 48.82 14 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 14 15 H -0.29 -14.23 7.11 99.48 0.71 -13.52 14 16 H -0.27 -12.70 6.52 99.48 0.65 -12.06 14 17 H 0.07 1.56 8.14 -2.39 -0.02 1.54 14 18 H 0.10 1.39 8.14 -2.39 -0.02 1.37 14 19 H 0.06 1.50 7.65 -2.39 -0.02 1.48 14 20 H 0.27 1.95 8.06 -2.91 -0.02 1.93 14 21 H 0.06 2.49 7.65 -2.39 -0.02 2.47 14 22 H 0.03 1.35 8.14 -2.39 -0.02 1.34 14 23 H 0.36 17.95 5.52 -92.70 -0.51 17.44 14 24 H 0.26 15.96 8.31 -92.70 -0.77 15.19 14 Total: -1.00 -72.46 219.17 4.83 -67.64 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.64 Total: 9.43 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 3.66 Total: -12.45 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -2.17 Total: -117.14 kcal Atomic # 8 Polarization: 2.90 SS G_CDS: 0.80 Total: 3.70 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -72.46 4.83 -67.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708446209.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.199 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds