Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27947 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48503 * 109.46831 * 239.99606 * 3 2 1 5 5 H 1.48498 * 109.47467 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47186 * 119.99849 * 3 2 1 7 7 C 1.50705 * 119.99899 * 179.97438 * 2 1 3 8 8 C 1.53013 * 109.62862 * 95.00291 * 7 2 1 9 9 C 1.50093 * 110.02430 * 190.50982 * 8 7 2 10 10 C 1.31360 * 123.82209 * 17.20917 * 9 8 7 11 Xx 1.56997 * 118.09457 * 179.57567 * 10 9 8 12 11 O 1.42000 * 119.99686 * 359.97438 * 11 10 9 13 12 O 1.41995 * 120.00082 * 180.02562 * 11 10 9 14 13 C 1.50098 * 123.81308 * 359.59818 * 10 9 8 15 14 C 1.53009 * 110.13336 * 17.16472 * 14 10 9 16 15 H 0.96994 * 119.99764 * 0.02562 * 1 2 3 17 16 H 1.08996 * 109.79223 * 215.50007 * 7 2 1 18 17 H 1.09002 * 109.36029 * 70.37216 * 8 7 2 19 18 H 1.08998 * 109.35790 * 310.64517 * 8 7 2 20 19 H 1.08007 * 118.08912 * 197.23515 * 9 8 7 21 20 H 0.96706 * 113.99411 * 179.97438 * 12 11 10 22 21 H 0.96699 * 114.00310 * 180.02562 * 13 11 10 23 22 H 1.08997 * 109.35831 * 137.36741 * 14 10 9 24 23 H 1.09002 * 109.35938 * 256.96039 * 14 10 9 25 24 H 1.08999 * 109.63186 * 69.98822 * 15 14 10 26 25 H 1.09005 * 109.62777 * 190.57437 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2795 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 3.0673 1.6962 -1.2125 5 1 1.2485 2.7465 -0.0006 6 1 3.0672 1.6964 1.2125 7 6 2.0330 -1.3052 0.0006 8 6 2.3988 -1.6881 -1.4350 9 6 2.9176 -3.0960 -1.4750 10 6 2.7362 -3.9697 -0.5111 11 8 4.0382 -5.7385 -1.8846 12 8 3.1570 -6.3876 0.3179 13 6 1.9941 -3.6704 0.7588 14 6 1.1455 -2.4087 0.5881 15 1 -0.4849 0.8400 -0.0004 16 1 2.9406 -1.2071 0.5961 17 1 3.1670 -1.0093 -1.8055 18 1 1.5136 -1.6111 -2.0662 19 1 3.4727 -3.4088 -2.3471 20 1 4.3659 -6.6480 -1.9086 21 1 3.5571 -7.2437 0.1129 22 1 1.3458 -4.5113 1.0053 23 1 2.7088 -3.5185 1.5677 24 1 0.3163 -2.6140 -0.0890 25 1 0.7606 -2.0923 1.5576 There are 31 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 31 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238607154.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = 128.458747 kcal Electronic energy + Delta-G solvation = -9879.875060 eV Core-core repulsion = 7868.308056 eV Total energy + Delta-G solvation = -2011.567004 eV No. of doubly occupied orbitals = 31 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 172.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.63099 -36.64547 -32.70020 -32.48051 -31.92002 -31.82734 -25.41540 -24.66169 -21.17140 -19.34591 -17.86273 -16.91407 -15.86638 -15.46731 -15.29690 -15.13254 -14.83068 -14.47515 -14.29201 -14.07816 -13.61892 -13.22337 -12.62815 -12.35771 -12.30163 -11.68101 -10.93844 -10.58462 -10.49442 -10.25906 -9.41619 -5.80787 -2.48532 0.10735 0.41656 0.72434 1.12283 1.40337 1.58303 2.73505 2.84586 3.12786 3.18465 3.28893 3.59687 3.80974 3.89968 4.04336 4.20189 4.32811 4.41166 4.53669 4.59311 4.82037 4.92485 6.46193 6.99817 7.18466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.001 4.001 3 Si 0.931 3.069 4 H -0.232 1.232 5 H -0.246 1.246 6 H -0.233 1.233 7 C -0.090 4.090 8 C -0.033 4.033 9 C -0.166 4.166 10 C 0.304 3.696 11 O -0.721 6.721 12 O -0.694 6.694 13 C -0.092 4.092 14 C -0.084 4.084 15 H 0.345 0.655 16 H 0.112 0.888 17 H 0.116 0.884 18 H 0.115 0.885 19 H 0.176 0.824 20 H 0.328 0.672 21 H 0.329 0.671 22 H 0.126 0.874 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 8.891 1.193 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.233 5.233 2 C -0.250 4.250 3 Si 0.746 3.254 4 H -0.154 1.154 5 H -0.168 1.168 6 H -0.155 1.155 7 C -0.109 4.109 8 C -0.070 4.070 9 C -0.183 4.183 10 C 0.296 3.704 11 O -0.551 6.551 12 O -0.524 6.524 13 C -0.128 4.128 14 C -0.121 4.121 15 H 0.163 0.837 16 H 0.130 0.870 17 H 0.134 0.866 18 H 0.133 0.867 19 H 0.193 0.807 20 H 0.162 0.838 21 H 0.163 0.837 22 H 0.144 0.856 23 H 0.135 0.865 24 H 0.116 0.884 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.024 10.336 1.380 10.857 hybrid contribution 0.986 -1.625 -0.424 1.947 sum -2.039 8.712 0.956 8.998 Atomic orbital electron populations 1.68118 1.09930 1.37870 1.07341 1.29946 0.96807 1.04648 0.93632 0.85749 0.81183 0.74637 0.83804 1.15415 1.16835 1.15504 1.21014 0.99734 0.93088 0.97024 1.20795 1.03342 0.85411 0.97473 1.23714 1.00845 0.92038 1.01715 1.31073 0.93460 0.49811 0.96026 1.93453 1.81797 1.29312 1.50488 1.93480 1.79875 1.31403 1.47628 1.21664 0.99790 0.99198 0.92148 1.21984 0.97000 0.87837 1.05261 0.83698 0.86984 0.86633 0.86698 0.80703 0.83800 0.83679 0.85614 0.86534 0.88398 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 2.59 12.86 56.23 0.72 3.31 15 2 C 0.00 0.01 4.82 -13.89 -0.07 -0.06 15 3 Si 0.93 -5.04 29.48 -169.99 -5.01 -10.05 15 4 H -0.23 1.16 7.11 56.52 0.40 1.56 15 5 H -0.25 0.95 7.11 56.52 0.40 1.36 15 6 H -0.23 1.02 7.11 56.52 0.40 1.42 15 7 C -0.09 0.57 2.15 -91.60 -0.20 0.37 15 8 C -0.03 0.21 5.34 -28.17 -0.15 0.06 15 9 C -0.17 0.41 9.57 -36.41 -0.35 0.06 15 10 C 0.30 0.11 9.67 -36.41 -0.35 -0.24 15 11 O -0.72 -7.44 16.81 -57.73 -0.97 -8.42 15 12 O -0.69 -6.88 17.37 -57.73 -1.00 -7.88 15 13 C -0.09 0.29 5.64 -28.17 -0.16 0.13 15 14 C -0.08 0.46 4.62 -26.56 -0.12 0.34 15 15 H 0.35 -1.71 8.23 -40.82 -0.34 -2.04 15 16 H 0.11 -0.91 7.85 -51.93 -0.41 -1.32 15 17 H 0.12 -0.96 8.14 -51.93 -0.42 -1.38 15 18 H 0.12 -0.80 8.10 -51.93 -0.42 -1.22 15 19 H 0.18 -0.14 7.28 -52.48 -0.38 -0.52 15 20 H 0.33 2.78 8.90 45.56 0.41 3.19 15 21 H 0.33 2.64 8.90 45.56 0.41 3.05 15 22 H 0.13 -0.25 8.10 -51.93 -0.42 -0.67 15 23 H 0.12 -0.51 8.14 -51.93 -0.42 -0.93 15 24 H 0.10 -0.48 8.06 -51.93 -0.42 -0.90 15 25 H 0.11 -0.69 8.14 -51.93 -0.42 -1.12 15 LS Contribution 229.50 15.07 3.46 3.46 Total: 0.00 -12.59 229.50 -5.84 -18.43 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -1.64 Total: 0.49 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.40 Total: 0.66 kcal Atomic # 7 Polarization: 2.59 SS G_CDS: 0.72 Total: 3.31 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.97 Total: -16.30 kcal Atomic # 14 Polarization: -5.04 SS G_CDS: -5.01 Total: -10.05 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -12.59 -5.84 -18.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238607154.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.886 kcal (2) G-P(sol) polarization free energy of solvation -12.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds