Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27947 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48503 * 109.46831 * 239.99606 * 3 2 1 5 5 H 1.48498 * 109.47467 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47186 * 119.99849 * 3 2 1 7 7 C 1.50705 * 119.99899 * 179.97438 * 2 1 3 8 8 C 1.53013 * 109.62862 * 95.00291 * 7 2 1 9 9 C 1.50093 * 110.02430 * 190.50982 * 8 7 2 10 10 C 1.31360 * 123.82209 * 17.20917 * 9 8 7 11 Xx 1.56997 * 118.09457 * 179.57567 * 10 9 8 12 11 O 1.42000 * 119.99686 * 359.97438 * 11 10 9 13 12 O 1.41995 * 120.00082 * 180.02562 * 11 10 9 14 13 C 1.50098 * 123.81308 * 359.59818 * 10 9 8 15 14 C 1.53009 * 110.13336 * 17.16472 * 14 10 9 16 15 H 0.96994 * 119.99764 * 0.02562 * 1 2 3 17 16 H 1.08996 * 109.79223 * 215.50007 * 7 2 1 18 17 H 1.09002 * 109.36029 * 70.37216 * 8 7 2 19 18 H 1.08998 * 109.35790 * 310.64517 * 8 7 2 20 19 H 1.08007 * 118.08912 * 197.23515 * 9 8 7 21 20 H 0.96706 * 113.99411 * 179.97438 * 12 11 10 22 21 H 0.96699 * 114.00310 * 180.02562 * 13 11 10 23 22 H 1.08997 * 109.35831 * 137.36741 * 14 10 9 24 23 H 1.09002 * 109.35938 * 256.96039 * 14 10 9 25 24 H 1.08999 * 109.63186 * 69.98822 * 15 14 10 26 25 H 1.09005 * 109.62777 * 190.57437 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2795 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 3.0673 1.6962 -1.2125 5 1 1.2485 2.7465 -0.0006 6 1 3.0672 1.6964 1.2125 7 6 2.0330 -1.3052 0.0006 8 6 2.3988 -1.6881 -1.4350 9 6 2.9176 -3.0960 -1.4750 10 6 2.7362 -3.9697 -0.5111 11 8 4.0382 -5.7385 -1.8846 12 8 3.1570 -6.3876 0.3179 13 6 1.9941 -3.6704 0.7588 14 6 1.1455 -2.4087 0.5881 15 1 -0.4849 0.8400 -0.0004 16 1 2.9406 -1.2071 0.5961 17 1 3.1670 -1.0093 -1.8055 18 1 1.5136 -1.6111 -2.0662 19 1 3.4727 -3.4088 -2.3471 20 1 4.3659 -6.6480 -1.9086 21 1 3.5571 -7.2437 0.1129 22 1 1.3458 -4.5113 1.0053 23 1 2.7088 -3.5185 1.5677 24 1 0.3163 -2.6140 -0.0890 25 1 0.7606 -2.0923 1.5576 There are 31 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 31 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238607154.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = 119.420794 kcal Electronic energy + Delta-G solvation = -9880.266975 eV Core-core repulsion = 7868.308056 eV Total energy + Delta-G solvation = -2011.958919 eV No. of doubly occupied orbitals = 31 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 172.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.38335 -36.35771 -32.98811 -32.55049 -32.30213 -31.69321 -25.11598 -24.38006 -20.82391 -19.08592 -17.50856 -16.67871 -15.58296 -15.52356 -15.25708 -15.01851 -14.83148 -14.53519 -14.12435 -13.85494 -13.32371 -12.85529 -12.25234 -11.99235 -11.90848 -11.30301 -11.16089 -11.03657 -10.80891 -10.09089 -9.84052 -6.49260 -2.40319 0.06792 0.83562 1.16025 1.55590 1.84748 2.01296 2.79163 3.12655 3.31392 3.50826 3.65107 3.92807 4.15380 4.21795 4.25972 4.55559 4.69250 4.70844 4.87647 4.94478 5.12953 5.25909 6.46547 6.65272 6.88623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C 0.016 3.984 3 Si 0.967 3.033 4 H -0.230 1.230 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.096 4.096 8 C -0.026 4.026 9 C -0.124 4.124 10 C 0.280 3.720 11 O -0.793 6.793 12 O -0.747 6.747 13 C -0.084 4.084 14 C -0.071 4.071 15 H 0.349 0.651 16 H 0.140 0.860 17 H 0.153 0.847 18 H 0.136 0.864 19 H 0.169 0.831 20 H 0.322 0.678 21 H 0.327 0.673 22 H 0.114 0.886 23 H 0.132 0.868 24 H 0.096 0.904 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 11.644 1.347 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.253 5.253 2 C -0.233 4.233 3 Si 0.784 3.216 4 H -0.152 1.152 5 H -0.196 1.196 6 H -0.168 1.168 7 C -0.115 4.115 8 C -0.063 4.063 9 C -0.141 4.141 10 C 0.276 3.724 11 O -0.625 6.625 12 O -0.579 6.579 13 C -0.120 4.120 14 C -0.108 4.108 15 H 0.167 0.833 16 H 0.158 0.842 17 H 0.170 0.830 18 H 0.153 0.847 19 H 0.185 0.815 20 H 0.156 0.844 21 H 0.160 0.840 22 H 0.132 0.868 23 H 0.150 0.850 24 H 0.115 0.885 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.674 13.138 1.537 13.729 hybrid contribution 1.011 -2.043 -0.454 2.324 sum -2.663 11.095 1.083 11.461 Atomic orbital electron populations 1.68137 1.10568 1.38356 1.08272 1.29860 0.96312 1.04398 0.92746 0.85213 0.79786 0.73480 0.83076 1.15235 1.19633 1.16841 1.21225 1.00690 0.92353 0.97228 1.21224 1.05037 0.81772 0.98285 1.24389 0.97498 0.92558 0.99691 1.32017 0.96636 0.44301 0.99410 1.93420 1.83239 1.28825 1.56997 1.93452 1.80295 1.32670 1.51453 1.21990 0.99733 0.99411 0.90878 1.22089 0.96369 0.85942 1.06405 0.83337 0.84237 0.82955 0.84682 0.81454 0.84432 0.83953 0.86800 0.85024 0.88503 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 6.95 12.86 24.11 0.31 7.26 15 2 C 0.02 -0.23 4.82 88.68 0.43 0.19 15 3 Si 0.97 -12.78 29.48 68.60 2.02 -10.76 15 4 H -0.23 3.05 7.11 99.48 0.71 3.76 15 5 H -0.27 2.36 7.11 99.48 0.71 3.07 15 6 H -0.25 2.68 7.11 99.48 0.71 3.39 15 7 C -0.10 1.57 2.15 -11.43 -0.02 1.55 15 8 C -0.03 0.44 5.34 29.66 0.16 0.60 15 9 C -0.12 0.81 9.57 25.11 0.24 1.05 15 10 C 0.28 0.25 9.67 25.11 0.24 0.49 15 11 O -0.79 -19.99 16.81 -127.47 -2.14 -22.14 15 12 O -0.75 -17.97 17.37 -127.47 -2.21 -20.19 15 13 C -0.08 0.60 5.64 29.66 0.17 0.77 15 14 C -0.07 0.97 4.62 30.70 0.14 1.11 15 15 H 0.35 -4.07 8.23 -92.71 -0.76 -4.83 15 16 H 0.14 -2.91 7.85 -2.39 -0.02 -2.92 15 17 H 0.15 -3.35 8.14 -2.39 -0.02 -3.37 15 18 H 0.14 -2.48 8.10 -2.39 -0.02 -2.50 15 19 H 0.17 -0.34 7.28 -2.91 -0.02 -0.36 15 20 H 0.32 7.39 8.90 -74.05 -0.66 6.73 15 21 H 0.33 7.02 8.90 -74.06 -0.66 6.36 15 22 H 0.11 -0.38 8.10 -2.39 -0.02 -0.40 15 23 H 0.13 -1.32 8.14 -2.39 -0.02 -1.34 15 24 H 0.10 -1.19 8.06 -2.39 -0.02 -1.21 15 25 H 0.13 -2.01 8.14 -2.38 -0.02 -2.03 15 Total: 0.00 -34.93 229.50 -0.79 -35.72 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -0.12 Total: 4.35 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 1.35 Total: 5.76 kcal Atomic # 7 Polarization: 6.95 SS G_CDS: 0.31 Total: 7.26 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -4.36 Total: -42.33 kcal Atomic # 14 Polarization: -12.78 SS G_CDS: 2.02 Total: -10.76 kcal Total: -34.93 -0.79 -35.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238607154.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.138 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds