Wall clock time and date at job start Mon Mar 30 2020 02:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29332 * 121.53613 * 2 1 4 4 S 1.69425 * 108.14608 * 180.24285 * 3 2 1 5 5 C 1.72005 * 96.17058 * 359.74170 * 4 3 2 6 6 C 1.50696 * 127.34083 * 180.02562 * 5 4 3 7 7 C 1.39049 * 105.31644 * 359.97438 * 5 4 3 8 8 C 1.41494 * 123.27825 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00098 * 139.93648 * 8 7 5 10 10 C 1.39705 * 119.99803 * 319.65026 * 8 7 5 11 11 N 1.31034 * 120.00228 * 340.24750 * 10 8 7 12 12 Si 1.86804 * 119.99799 * 160.23529 * 10 8 7 13 13 H 1.48502 * 109.46702 * 90.00753 * 12 10 8 14 14 H 1.48493 * 109.47062 * 210.00281 * 12 10 8 15 15 H 1.48495 * 109.46959 * 330.00811 * 12 10 8 16 16 H 1.09005 * 109.46911 * 265.03064 * 1 2 3 17 17 H 1.08989 * 109.47639 * 25.03107 * 1 2 3 18 18 H 1.08996 * 109.46780 * 145.03744 * 1 2 3 19 19 H 1.09000 * 109.46826 * 269.99821 * 6 5 4 20 20 H 1.09002 * 109.47515 * 29.99515 * 6 5 4 21 21 H 1.08996 * 109.47304 * 149.99918 * 6 5 4 22 22 H 0.97000 * 119.99757 * 185.06452 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1834 1.1023 0.0000 4 16 3.8316 0.7100 -0.0068 5 6 3.6155 -0.9964 -0.0021 6 6 4.6892 -2.0538 -0.0043 7 6 2.2389 -1.1923 0.0053 8 6 1.6369 -2.4728 0.0106 9 1 0.7624 -2.6559 0.6174 10 6 2.1701 -3.4985 -0.7738 11 7 2.9540 -3.2111 -1.7838 12 14 1.7658 -5.2798 -0.3827 13 1 0.5447 -5.6846 -1.1245 14 1 2.9016 -6.1459 -0.7890 15 1 1.5297 -5.4250 1.0762 16 1 -0.3633 -0.0890 1.0239 17 1 -0.3634 0.9310 -0.4348 18 1 -0.3633 -0.8422 -0.5889 19 1 4.9437 -2.3110 -1.0325 20 1 5.5748 -1.6735 0.5049 21 1 4.3259 -2.9417 0.5130 22 1 3.2648 -3.9166 -2.3725 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002506109.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:50 Heat of formation + Delta-G solvation = -1.282678 kcal Electronic energy + Delta-G solvation = -9132.117122 eV Core-core repulsion = 7391.336406 eV Total energy + Delta-G solvation = -1740.780716 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.52164 -35.56365 -32.65627 -30.60503 -29.16983 -26.17603 -22.38549 -20.36335 -18.29751 -18.03526 -16.54598 -15.31553 -15.19776 -14.28339 -14.12644 -13.88124 -13.32931 -13.13299 -12.72270 -12.71017 -12.56650 -12.43917 -12.06360 -11.24925 -11.12145 -10.74046 -9.48274 -9.00230 -8.48023 -6.29049 0.40578 1.30704 1.37025 1.47276 1.57991 1.59102 2.11164 2.32305 3.15697 4.22975 4.64645 4.76012 4.79593 4.87946 5.04600 5.11437 5.32193 5.40325 5.56733 5.79161 6.09536 6.51387 6.82050 7.01178 8.52455 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.051140 B = 0.017794 C = 0.014144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.389498 B = 1573.200909 C = 1979.119963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.097 3.903 3 N -0.507 5.507 4 S 0.118 5.882 5 C -0.295 4.295 6 C -0.015 4.015 7 C -0.009 4.009 8 C -0.466 4.466 9 H 0.084 0.916 10 C 0.041 3.959 11 N -0.831 5.831 12 Si 0.969 3.031 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.261 1.261 16 H 0.087 0.913 17 H 0.073 0.927 18 H 0.081 0.919 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -1.655 2.072 2.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 N -0.326 5.326 4 S 0.271 5.729 5 C -0.424 4.424 6 C -0.074 4.074 7 C -0.022 4.022 8 C -0.501 4.501 9 H 0.102 0.898 10 C -0.172 4.172 11 N -0.459 5.459 12 Si 0.791 3.209 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.185 1.185 16 H 0.105 0.895 17 H 0.092 0.908 18 H 0.100 0.900 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.201 0.341 1.919 1.960 hybrid contribution -0.757 -2.302 -0.161 2.428 sum -0.958 -1.961 1.758 2.802 Atomic orbital electron populations 1.20413 0.85560 1.03054 1.03458 1.22505 0.99857 0.89152 0.97105 1.75929 1.00872 1.27978 1.27838 1.82579 1.10964 1.02312 1.77030 1.25104 0.98472 0.96884 1.21891 1.19608 0.92957 0.94375 1.00482 1.18073 0.90618 0.94598 0.98927 1.19029 1.12779 0.93099 1.25147 0.89776 1.26387 0.93152 1.04244 0.93423 1.69970 1.27905 1.36360 1.11641 0.85384 0.78583 0.77148 0.79738 1.19012 1.19966 1.18457 0.89487 0.90833 0.90044 0.92565 0.93137 0.93378 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.40 9.84 71.24 0.70 -1.70 14 2 C 0.10 4.69 6.76 43.33 0.29 4.99 14 3 N -0.51 -24.88 11.94 -50.36 -0.60 -25.48 14 4 S 0.12 5.60 23.68 -56.49 -1.34 4.26 14 5 C -0.29 -15.01 6.25 25.88 0.16 -14.85 14 6 C -0.02 -0.70 8.65 71.23 0.62 -0.08 14 7 C -0.01 -0.48 5.27 -21.88 -0.12 -0.59 14 8 C -0.47 -23.57 7.94 23.43 0.19 -23.39 14 9 H 0.08 4.03 7.88 -2.91 -0.02 4.00 14 10 C 0.04 2.00 4.01 85.17 0.34 2.34 14 11 N -0.83 -42.24 10.60 21.79 0.23 -42.01 14 12 Si 0.97 37.11 29.61 68.60 2.03 39.15 14 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 14 14 H -0.27 -10.29 7.11 99.48 0.71 -9.58 14 15 H -0.26 -9.82 7.11 99.48 0.71 -9.11 14 16 H 0.09 2.91 8.14 -2.38 -0.02 2.89 14 17 H 0.07 2.52 8.14 -2.39 -0.02 2.50 14 18 H 0.08 3.07 7.58 -2.39 -0.02 3.05 14 19 H 0.06 2.70 7.02 -2.39 -0.02 2.68 14 20 H 0.05 2.03 8.14 -2.39 -0.02 2.01 14 21 H 0.05 2.25 7.12 -2.39 -0.02 2.23 14 22 H 0.28 13.19 8.31 -92.71 -0.77 12.42 14 Total: -1.00 -57.08 208.22 3.72 -53.35 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.22 Total: 4.01 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 2.18 Total: -33.29 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -0.37 Total: -67.48 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.34 Total: 4.26 kcal Total: -57.08 3.72 -53.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002506109.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.072 kcal (2) G-P(sol) polarization free energy of solvation -57.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds