Wall clock time and date at job start Mon Mar 30 2020 02:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50698 * 109.46650 * 119.99787 * 2 1 3 5 5 H 1.08003 * 120.00057 * 120.00519 * 4 2 1 6 6 C 1.37876 * 120.00356 * 299.99719 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46744 * 90.00434 * 8 6 4 10 10 H 1.48500 * 109.47304 * 210.00023 * 8 6 4 11 11 H 1.48498 * 109.47341 * 330.00626 * 8 6 4 12 12 C 1.52992 * 109.47106 * 240.00064 * 2 1 3 13 13 C 1.52997 * 109.47482 * 60.00162 * 12 2 1 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 17 17 C 1.52999 * 109.46961 * 180.02562 * 12 2 1 18 18 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 19 19 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 20 20 H 1.09002 * 109.47596 * 180.02562 * 1 2 3 21 21 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 22 22 H 1.09002 * 109.47103 * 299.99915 * 12 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 13 12 2 24 24 H 1.09001 * 109.46832 * 299.99974 * 13 12 2 25 25 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 26 26 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 27 27 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 29 29 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 30 30 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47486 * 59.99547 * 17 12 2 32 32 H 1.09002 * 109.46716 * 299.99630 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.6294 -0.5459 4.4124 10 1 1.3429 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7121 12 6 2.0400 -0.7212 -1.2492 13 6 1.5301 0.0000 -2.4984 14 6 2.0396 -0.7217 -3.7476 15 6 3.5696 -0.7222 -3.7479 16 6 4.0795 -1.4434 -2.4987 17 6 3.5700 -0.7217 -1.2488 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 0.7081 1.1610 3.4844 22 1 1.6767 -1.7489 -1.2492 23 1 1.8934 1.0277 -2.4984 24 1 0.4401 0.0000 -2.4985 25 1 1.6759 -1.7491 -3.7474 26 1 1.6767 -0.2075 -4.6376 27 1 3.9327 -1.2359 -4.6380 28 1 3.9333 0.3053 -3.7481 29 1 3.7158 -2.4710 -2.4985 30 1 5.1695 -1.4434 -2.4986 31 1 3.9330 -1.2358 -0.3588 32 1 3.9336 0.3058 -1.2486 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036466244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:00 Heat of formation + Delta-G solvation = -43.323037 kcal Electronic energy + Delta-G solvation = -11516.783690 eV Core-core repulsion = 9668.519197 eV Total energy + Delta-G solvation = -1848.264494 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.13758 -34.08009 -31.32729 -30.16790 -27.74448 -25.11704 -22.35886 -21.67319 -19.51940 -18.75324 -16.12717 -15.04835 -14.29371 -13.83583 -13.51775 -13.03329 -12.45085 -12.19745 -11.83672 -11.56020 -11.30777 -10.88320 -10.64037 -10.54596 -10.49222 -10.13035 -9.97638 -9.93251 -9.63197 -9.31904 -8.73408 -8.51035 -8.22602 -5.89279 -3.94502 3.34438 3.41157 3.44338 4.50222 5.24756 5.35534 5.36312 5.41618 5.85955 5.94853 6.09871 6.11699 6.15244 6.23812 6.29751 6.48345 6.62726 6.70897 6.80212 6.88444 7.00619 7.04332 7.22683 7.26579 7.39561 7.53207 7.83500 8.12373 8.26992 8.57986 9.09389 9.69395 11.16600 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.058105 B = 0.011989 C = 0.010442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.772883 B = 2334.972776 C = 2680.946805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 H 0.023 0.977 4 C -0.505 4.505 5 H 0.055 0.945 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.074 4.074 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.105 4.105 18 H 0.078 0.922 19 H 0.009 0.991 20 H 0.022 0.978 21 H 0.257 0.743 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -2.435 -8.767 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.029 3.971 3 H 0.041 0.959 4 C -0.543 4.543 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.093 4.093 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.142 4.142 18 H 0.097 0.903 19 H 0.028 0.972 20 H 0.041 0.959 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.790 -2.325 -8.626 9.359 hybrid contribution 0.290 -0.443 0.930 1.070 sum 3.081 -2.768 -7.696 8.739 Atomic orbital electron populations 1.21840 0.99159 0.98652 0.99858 1.18683 0.92210 0.95527 0.90723 0.95929 1.21250 1.30398 1.12010 0.90652 0.92680 1.24975 0.95299 0.95080 0.98863 1.69899 1.37126 1.23201 1.22988 0.86687 0.78542 0.80128 0.83181 1.20841 1.21390 1.20032 1.21176 0.94087 0.98993 0.95033 1.21684 1.00142 0.99061 0.94478 1.21550 0.95463 1.00451 0.98080 1.21508 0.96104 1.00331 0.97404 1.21612 0.99104 0.99386 0.95730 1.21513 0.96674 0.99763 0.96256 0.90294 0.97230 0.95923 0.93256 0.92959 0.92833 0.92301 0.92617 0.93227 0.93275 0.92484 0.92706 0.93184 0.91303 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.62 37.16 0.32 -3.08 16 2 C 0.05 1.18 1.89 -91.78 -0.17 1.01 16 3 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.50 -13.92 7.83 -34.44 -0.27 -14.19 16 5 H 0.06 1.50 6.71 -52.48 -0.35 1.15 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -26.06 11.32 55.43 0.63 -25.43 16 8 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C -0.07 -1.55 1.73 -90.63 -0.16 -1.71 16 13 C -0.12 -2.10 4.85 -26.73 -0.13 -2.23 16 14 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 15 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 16 C -0.12 -1.91 5.92 -26.70 -0.16 -2.07 16 17 C -0.10 -2.03 4.96 -26.70 -0.13 -2.16 16 18 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 19 H 0.01 0.20 6.43 -51.93 -0.33 -0.14 16 20 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 22 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 245.26 15.07 3.70 3.70 Total: -1.00 -28.12 245.26 -7.27 -35.39 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.46 Total: -3.59 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -1.11 Total: -26.66 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.63 Total: -25.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.12 -7.27 -35.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036466244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.933 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds