Wall clock time and date at job start Mon Mar 30 2020 02:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50698 * 109.46650 * 119.99787 * 2 1 3 5 5 H 1.08003 * 120.00057 * 120.00519 * 4 2 1 6 6 C 1.37876 * 120.00356 * 299.99719 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46744 * 90.00434 * 8 6 4 10 10 H 1.48500 * 109.47304 * 210.00023 * 8 6 4 11 11 H 1.48498 * 109.47341 * 330.00626 * 8 6 4 12 12 C 1.52992 * 109.47106 * 240.00064 * 2 1 3 13 13 C 1.52997 * 109.47482 * 60.00162 * 12 2 1 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 2 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 17 17 C 1.52999 * 109.46961 * 180.02562 * 12 2 1 18 18 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 19 19 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 20 20 H 1.09002 * 109.47596 * 180.02562 * 1 2 3 21 21 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 22 22 H 1.09002 * 109.47103 * 299.99915 * 12 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 13 12 2 24 24 H 1.09001 * 109.46832 * 299.99974 * 13 12 2 25 25 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 26 26 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 27 27 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 29 29 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 30 30 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47486 * 59.99547 * 17 12 2 32 32 H 1.09002 * 109.46716 * 299.99630 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.6294 -0.5459 4.4124 10 1 1.3429 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7121 12 6 2.0400 -0.7212 -1.2492 13 6 1.5301 0.0000 -2.4984 14 6 2.0396 -0.7217 -3.7476 15 6 3.5696 -0.7222 -3.7479 16 6 4.0795 -1.4434 -2.4987 17 6 3.5700 -0.7217 -1.2488 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 0.7081 1.1610 3.4844 22 1 1.6767 -1.7489 -1.2492 23 1 1.8934 1.0277 -2.4984 24 1 0.4401 0.0000 -2.4985 25 1 1.6759 -1.7491 -3.7474 26 1 1.6767 -0.2075 -4.6376 27 1 3.9327 -1.2359 -4.6380 28 1 3.9333 0.3053 -3.7481 29 1 3.7158 -2.4710 -2.4985 30 1 5.1695 -1.4434 -2.4986 31 1 3.9330 -1.2358 -0.3588 32 1 3.9336 0.3058 -1.2486 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036466244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:00 Heat of formation + Delta-G solvation = -57.809504 kcal Electronic energy + Delta-G solvation = -11517.411871 eV Core-core repulsion = 9668.519197 eV Total energy + Delta-G solvation = -1848.892674 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.65242 -35.93554 -33.24500 -31.55649 -29.44744 -27.21120 -24.01698 -23.08815 -21.10498 -20.38622 -18.25185 -16.78146 -16.03818 -15.24695 -14.92579 -14.69865 -14.12651 -14.00499 -13.47789 -13.19426 -12.93668 -12.83067 -12.44808 -12.18792 -12.02314 -11.79819 -11.74430 -11.57022 -11.21540 -11.05008 -10.48768 -10.38667 -10.31727 -8.04582 -6.16993 1.40264 1.40944 1.50960 2.44803 3.22276 3.96316 4.06248 4.10098 4.49205 4.51737 4.76526 4.78396 4.79855 4.82608 4.90175 4.98978 5.09285 5.25491 5.34011 5.34381 5.37812 5.40173 5.53344 5.55995 5.64976 5.71798 5.72959 6.07648 6.21952 6.46010 6.95290 7.50356 9.00140 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.058105 B = 0.011989 C = 0.010442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.772883 B = 2334.972776 C = 2680.946805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.043 3.957 3 H -0.011 1.011 4 C -0.519 4.519 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.922 5.922 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.268 1.268 12 C -0.069 4.069 13 C -0.113 4.113 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.103 4.103 18 H 0.049 0.951 19 H 0.032 0.968 20 H 0.022 0.978 21 H 0.258 0.742 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -3.417 -10.092 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.024 3.976 3 H 0.007 0.993 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.562 5.562 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.088 4.088 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.141 4.141 18 H 0.068 0.932 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.489 -3.313 -9.960 11.061 hybrid contribution 0.063 -0.107 1.348 1.354 sum 3.552 -3.420 -8.612 9.923 Atomic orbital electron populations 1.21693 0.98896 0.98467 0.99537 1.18687 0.92490 0.93936 0.92455 0.99285 1.21594 1.30240 1.12036 0.91867 0.92837 1.25761 0.95595 0.95852 1.01914 1.70040 1.38153 1.24478 1.23565 0.85686 0.78025 0.79250 0.79492 1.20295 1.21094 1.19260 1.21050 0.95184 0.98167 0.94387 1.21623 0.99942 0.98786 0.94723 1.21525 0.96041 1.00502 0.97009 1.21516 0.95442 1.00572 0.97595 1.21564 1.00158 0.99149 0.94392 1.21447 0.95585 0.99456 0.97570 0.93230 0.94896 0.95853 0.93307 0.93602 0.93455 0.92602 0.92104 0.90890 0.90366 0.92427 0.92280 0.91481 0.93609 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.62 71.98 0.62 -5.81 16 2 C 0.04 2.20 1.89 -11.54 -0.02 2.18 16 3 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 4 C -0.52 -29.13 7.83 25.60 0.20 -28.93 16 5 H 0.05 2.95 6.71 -2.91 -0.02 2.93 16 6 C 0.01 0.36 5.30 84.65 0.45 0.81 16 7 N -0.92 -54.99 11.32 21.45 0.24 -54.75 16 8 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C -0.07 -2.88 1.73 -10.80 -0.02 -2.90 16 13 C -0.11 -3.94 4.85 30.59 0.15 -3.79 16 14 C -0.11 -3.05 5.92 30.60 0.18 -2.87 16 15 C -0.11 -2.87 5.92 30.59 0.18 -2.69 16 16 C -0.12 -3.35 5.92 30.61 0.18 -3.17 16 17 C -0.10 -3.95 4.96 30.61 0.15 -3.79 16 18 H 0.05 2.77 6.07 -2.39 -0.01 2.75 16 19 H 0.03 1.44 6.43 -2.39 -0.02 1.43 16 20 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.95 6.43 -2.39 -0.02 1.93 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.35 245.26 5.40 -54.95 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 1.06 Total: 4.03 kcal Atomic # 6 Polarization: -53.04 SS G_CDS: 2.07 Total: -50.97 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.24 Total: -54.75 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.35 5.40 -54.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036466244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.859 kcal (2) G-P(sol) polarization free energy of solvation -60.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds