Wall clock time and date at job start Mon Mar 30 2020 02:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29488 * 1 3 3 Si 1.86797 * 120.00402 * 2 1 4 4 H 1.48505 * 109.46873 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47285 * 120.00101 * 3 2 1 6 6 H 1.48506 * 109.47190 * 240.00202 * 3 2 1 7 7 C 1.46666 * 119.99935 * 179.72601 * 2 1 3 8 8 H 1.07999 * 119.99682 * 4.05821 * 7 2 1 9 9 C 1.37888 * 120.00305 * 184.05938 * 7 2 1 10 10 C 1.41126 * 126.19684 * 186.01891 * 9 7 2 11 11 C 1.38543 * 106.42683 * 179.97438 * 10 9 7 12 12 C 1.37771 * 107.32134 * 0.02562 * 11 10 9 13 13 N 1.48014 * 125.39387 * 180.02562 * 12 11 10 14 14 O 1.31695 * 120.00030 * 359.97438 * 13 12 11 15 15 O 1.31702 * 119.99842 * 179.97438 * 13 12 11 16 16 O 1.33633 * 109.21267 * 359.74975 * 12 11 10 17 17 H 0.96996 * 120.00663 * 174.82936 * 1 2 3 18 18 H 1.07997 * 126.78432 * 359.95189 * 10 9 7 19 19 H 1.08006 * 126.34222 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 1.2640 2.7464 0.0006 5 1 3.0828 1.6963 1.2125 6 1 3.0827 1.6963 -1.2126 7 6 2.0282 -1.2702 0.0061 8 1 1.4902 -2.2046 -0.0557 9 6 3.4045 -1.2713 0.0906 10 6 4.2448 -2.4005 -0.0121 11 6 5.5427 -1.9372 0.1305 12 6 5.4737 -0.5734 0.3131 13 7 6.6337 0.3255 0.5064 14 8 7.8548 -0.1676 0.5134 15 8 6.4445 1.6183 0.6714 16 8 4.1940 -0.1897 0.2819 17 1 -0.4851 -0.8365 -0.0757 18 1 3.9370 -3.4235 -0.1702 19 1 6.4421 -2.5347 0.1044 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036896508.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:53 Heat of formation + Delta-G solvation = -17.000933 kcal Electronic energy + Delta-G solvation = -10638.896913 eV Core-core repulsion = 8318.848637 eV Total energy + Delta-G solvation = -2320.048276 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.036 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.25045 -38.62173 -36.56503 -34.66959 -33.89842 -32.34852 -28.77504 -25.08661 -22.86661 -22.21898 -20.92648 -19.38571 -18.11926 -17.46034 -17.12906 -16.32120 -15.58287 -15.05121 -14.40018 -14.13008 -13.75840 -13.36696 -12.71951 -11.95124 -11.76309 -11.59594 -11.41608 -11.37816 -11.14153 -10.30675 -10.10486 -7.47544 -1.18711 0.44788 0.60774 1.26497 1.34774 1.52879 1.68415 1.97423 2.34939 2.75709 3.78195 3.94060 4.47203 4.49708 4.68902 4.94903 5.05601 5.33465 5.58406 5.78687 5.97678 6.80538 7.13800 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.053818 B = 0.016980 C = 0.013002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.143421 B = 1648.644817 C = 2152.921135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.678 5.678 2 C 0.026 3.974 3 Si 1.068 2.932 4 H -0.241 1.241 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.293 4.293 8 H 0.177 0.823 9 C 0.135 3.865 10 C -0.215 4.215 11 C -0.053 4.053 12 C -0.029 4.029 13 N 0.068 4.932 14 O -0.419 6.419 15 O -0.465 6.465 16 O -0.239 6.239 17 H 0.329 0.671 18 H 0.210 0.790 19 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 -7.808 -2.011 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.296 5.296 2 C -0.213 4.213 3 Si 0.893 3.107 4 H -0.165 1.165 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.319 4.319 8 H 0.194 0.806 9 C 0.084 3.916 10 C -0.238 4.238 11 C -0.074 4.074 12 C -0.194 4.194 13 N 0.428 4.572 14 O -0.534 6.534 15 O -0.577 6.577 16 O -0.145 6.145 17 H 0.145 0.855 18 H 0.227 0.773 19 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.142 -5.827 -1.883 11.003 hybrid contribution 0.807 -1.018 0.099 1.302 sum -8.335 -6.844 -1.784 10.932 Atomic orbital electron populations 1.69985 1.07911 1.36954 1.14713 1.29163 0.95591 1.04973 0.91544 0.83280 0.74207 0.73132 0.80091 1.16479 1.20928 1.20516 1.22747 0.87848 0.99372 1.21888 0.80613 1.20599 0.91923 0.83995 0.95054 1.22821 0.89160 1.00416 1.11432 1.21846 1.01212 0.88672 0.95637 1.21691 0.78762 0.88209 1.30711 1.48316 1.01007 1.01263 1.06659 1.96001 1.02999 1.80690 1.73702 1.96040 1.93878 0.94561 1.73242 1.83877 1.13969 1.35713 1.80921 0.85491 0.77315 0.80282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -21.91 13.58 23.24 0.32 -21.59 13 2 C 0.03 0.91 5.69 87.24 0.50 1.41 13 3 Si 1.07 42.63 26.15 68.60 1.79 44.42 13 4 H -0.24 -8.54 7.11 99.48 0.71 -7.83 13 5 H -0.28 -13.33 6.85 99.48 0.68 -12.65 13 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 13 7 C -0.29 -9.45 10.00 24.39 0.24 -9.21 13 8 H 0.18 4.27 8.06 -2.91 -0.02 4.25 13 9 C 0.13 5.14 6.54 22.90 0.15 5.29 13 10 C -0.22 -6.81 10.96 23.05 0.25 -6.56 13 11 C -0.05 -2.09 10.58 22.23 0.24 -1.85 13 12 C -0.03 -1.49 8.36 81.82 0.68 -0.81 13 13 N 0.07 4.25 4.98 -153.65 -0.77 3.49 13 14 O -0.42 -26.13 19.74 3.52 0.07 -26.06 13 15 O -0.47 -31.70 19.97 5.54 0.11 -31.59 13 16 O -0.24 -11.80 6.24 -4.85 -0.03 -11.83 13 17 H 0.33 8.84 8.74 -92.71 -0.81 8.03 13 18 H 0.21 4.28 8.06 -2.91 -0.02 4.26 13 19 H 0.18 6.05 8.06 -2.91 -0.02 6.03 13 Total: -1.00 -69.17 196.78 4.77 -64.40 By element: Atomic # 1 Polarization: -10.71 SS G_CDS: 1.22 Total: -9.50 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 2.06 Total: -11.74 kcal Atomic # 7 Polarization: -17.66 SS G_CDS: -0.45 Total: -18.11 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: 0.15 Total: -69.48 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.79 Total: 44.42 kcal Total: -69.17 4.77 -64.40 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036896508.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.396 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds