Wall clock time and date at job start Mon Mar 30 2020 02:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86798 * 119.99675 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00151 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99901 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99612 * 3 2 1 7 7 C 1.40270 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.40119 * 120.00055 * 0.02562 * 7 2 1 10 10 N 1.31174 * 125.20128 * 179.72237 * 9 7 2 11 11 C 1.31780 * 115.85909 * 179.77907 * 10 9 7 12 12 C 1.46770 * 122.59712 * 180.25847 * 11 10 9 13 13 O 1.21322 * 119.99713 * 180.26820 * 12 11 10 14 14 C 1.37733 * 114.80292 * 0.50428 * 11 10 9 15 15 S 1.70990 * 109.02590 * 359.73269 * 14 11 10 16 16 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 17 17 H 1.07994 * 120.00379 * 0.26387 * 12 11 10 18 18 H 1.07994 * 125.48303 * 179.75137 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.4881 2.0465 1.4000 5 1 3.5381 1.4401 -0.7001 6 1 1.4380 2.6526 -0.7001 7 6 2.0080 -1.2148 0.0005 8 1 3.0880 -1.2148 0.0001 9 6 1.3074 -2.4282 0.0005 10 7 1.8576 -3.6190 -0.0042 11 6 1.0222 -4.6382 0.0013 12 6 1.4773 -6.0336 0.0028 13 8 0.6664 -6.9360 0.0030 14 6 -0.3110 -4.2925 0.0003 15 16 -0.4448 -2.5878 -0.0006 16 1 -0.4850 0.8400 -0.0004 17 1 2.5339 -6.2570 0.0036 18 1 -1.1385 -4.9864 0.0004 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037974035.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:20 Heat of formation + Delta-G solvation = -21.137526 kcal Electronic energy + Delta-G solvation = -8519.384419 eV Core-core repulsion = 6641.909638 eV Total energy + Delta-G solvation = -1877.474781 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 183.009 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.53999 -36.83346 -34.15342 -29.53737 -26.45342 -24.90991 -21.38124 -18.39255 -17.85918 -16.31650 -15.32993 -14.52945 -14.19956 -13.70335 -13.27173 -12.37331 -12.30522 -11.85521 -11.41888 -10.68719 -10.54723 -10.21942 -9.74708 -8.93036 -8.11569 -7.99745 -7.43087 -7.18998 -4.88410 1.88445 2.65660 2.88438 2.94810 3.14309 3.28293 3.59532 3.79121 4.21150 5.05436 5.21801 5.93204 6.56765 6.73338 6.89294 7.23741 7.77267 8.04337 8.22425 8.27586 9.51237 9.71259 Molecular weight = 183.01amu Principal moments of inertia in cm(-1) A = 0.097168 B = 0.012460 C = 0.011087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.092222 B = 2246.694621 C = 2524.944279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.055 3.945 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.256 1.256 6 H -0.272 1.272 7 C -0.376 4.376 8 H 0.106 0.894 9 C 0.198 3.802 10 N -0.575 5.575 11 C -0.004 4.004 12 C 0.420 3.580 13 O -0.489 6.489 14 C -0.385 4.385 15 S 0.143 5.857 16 H 0.300 0.700 17 H 0.095 0.905 18 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 2.837 0.014 3.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.180 1.180 6 H -0.197 1.197 7 C -0.419 4.419 8 H 0.124 0.876 9 C -0.057 4.057 10 N -0.298 5.298 11 C -0.142 4.142 12 C 0.279 3.721 13 O -0.364 6.364 14 C -0.532 4.532 15 S 0.404 5.596 16 H 0.114 0.886 17 H 0.111 0.889 18 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.271 3.154 0.002 3.166 hybrid contribution 0.512 -0.181 0.010 0.543 sum 0.783 2.973 0.012 3.075 Atomic orbital electron populations 1.68675 1.07803 1.31092 1.33793 1.26205 0.95118 1.02809 0.92550 0.85664 0.79995 0.77910 0.79681 1.18863 1.17967 1.19699 1.19060 0.95874 0.87128 1.39847 0.87615 1.23880 0.91295 0.94166 0.96387 1.67329 1.34335 0.97079 1.31047 1.20997 0.89831 0.95886 1.07502 1.23293 0.94000 0.86143 0.68704 1.90426 1.59966 1.48517 1.37456 1.27003 0.99812 1.04891 1.21524 1.84363 1.11640 0.93338 1.70240 0.88648 0.88867 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.13 10.63 55.56 0.59 -17.54 13 2 C 0.06 1.24 5.50 -17.29 -0.10 1.15 13 3 Si 0.94 16.74 29.56 -169.99 -5.03 11.71 13 4 H -0.26 -4.61 7.11 56.52 0.40 -4.21 13 5 H -0.26 -4.50 7.11 56.52 0.40 -4.10 13 6 H -0.27 -4.68 7.11 56.52 0.40 -4.28 13 7 C -0.38 -9.39 9.46 -38.11 -0.36 -9.75 13 8 H 0.11 2.52 7.85 -52.49 -0.41 2.11 13 9 C 0.20 5.27 7.11 -17.13 -0.12 5.15 13 10 N -0.57 -15.19 10.69 -9.72 -0.10 -15.29 13 11 C 0.00 -0.09 6.69 -84.63 -0.57 -0.66 13 12 C 0.42 8.98 11.73 34.18 0.40 9.38 13 13 O -0.49 -11.21 17.52 5.52 0.10 -11.11 13 14 C -0.38 -9.56 10.68 30.55 0.33 -9.23 13 15 S 0.14 3.57 20.11 -107.50 -2.16 1.41 13 16 H 0.30 6.18 8.29 -40.82 -0.34 5.84 13 17 H 0.10 1.66 8.06 -52.49 -0.42 1.23 13 18 H 0.14 3.33 8.03 -52.49 -0.42 2.91 13 LS Contribution 193.22 15.07 2.91 2.91 Total: -1.00 -27.86 193.22 -4.50 -32.36 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -0.39 Total: -0.49 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.42 Total: -3.95 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.49 Total: -32.83 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.10 Total: -11.11 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.16 Total: 1.41 kcal Total LS contribution 2.91 Total: 2.91 kcal Total: -27.86 -4.50 -32.36 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037974035.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.222 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds