Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21261 * 120.00173 * 2 1 4 4 C 1.46844 * 119.99829 * 180.02562 * 2 1 3 5 5 N 1.29267 * 125.87640 * 0.02562 * 4 2 1 6 6 O 1.41389 * 112.83355 * 180.28671 * 5 4 2 7 7 C 1.44202 * 107.60803 * 342.49003 * 6 5 4 8 8 H 1.09000 * 110.96613 * 267.28791 * 7 6 5 9 9 C 1.50694 * 110.97090 * 143.56197 * 7 6 5 10 10 H 1.08000 * 120.00563 * 244.48826 * 9 7 6 11 11 C 1.37885 * 119.99902 * 64.48663 * 9 7 6 12 12 N 1.31518 * 119.99792 * 179.72330 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 0.02562 * 11 9 7 14 14 H 1.48501 * 109.47088 * 89.99795 * 13 11 9 15 15 H 1.48495 * 109.47293 * 209.99997 * 13 11 9 16 16 H 1.48507 * 109.47015 * 329.99955 * 13 11 9 17 17 C 1.51750 * 125.86448 * 179.97438 * 4 2 1 18 18 H 1.08996 * 109.47653 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47155 * 299.99916 * 1 2 3 20 20 H 1.09002 * 109.47045 * 59.99598 * 1 2 3 21 21 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 22 22 H 1.08998 * 110.78724 * 77.17188 * 17 4 2 23 23 H 1.08998 * 110.82399 * 313.68571 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2411 -1.2717 -0.0006 5 7 1.7128 -2.4515 -0.0016 6 8 2.6778 -3.4848 0.0046 7 6 3.9355 -2.9096 -0.4035 8 1 4.0781 -3.0071 -1.4797 9 6 5.0830 -3.5331 0.3485 10 1 5.6789 -2.9323 1.0197 11 6 5.3722 -4.8706 0.1797 12 7 6.3771 -5.4135 0.8318 13 14 4.3421 -5.9096 -0.9816 14 1 4.9341 -5.8649 -2.3428 15 1 4.3164 -7.3137 -0.4989 16 1 2.9569 -5.3761 -1.0264 17 6 3.7507 -1.4268 -0.0012 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 6.5803 -6.3545 0.7133 22 1 4.1590 -1.2415 0.9923 23 1 4.2078 -0.7663 -0.7379 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039069807.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = -15.034639 kcal Electronic energy + Delta-G solvation = -10782.223932 eV Core-core repulsion = 8598.094015 eV Total energy + Delta-G solvation = -2184.129917 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.75582 -38.44129 -33.19280 -32.29767 -30.38842 -29.62080 -25.50547 -23.46602 -20.97212 -18.74341 -17.25220 -16.32245 -15.48299 -15.13822 -14.68918 -14.18803 -14.05688 -12.90152 -12.67302 -12.36634 -12.25959 -11.98335 -11.31471 -11.02029 -10.63232 -10.47099 -9.97326 -9.71197 -9.66791 -8.78862 -8.57264 -6.31806 -4.44323 1.05450 2.95968 3.23807 3.25206 3.50191 3.62089 4.23217 4.33526 4.89063 5.07952 5.35813 5.42639 5.47731 5.61096 5.82275 5.87978 6.17647 6.48157 6.77545 7.24764 7.36035 7.98788 8.17687 8.67231 9.27411 10.77732 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.077595 B = 0.011784 C = 0.010684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.762156 B = 2375.548752 C = 2620.083005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.434 3.566 3 O -0.447 6.447 4 C -0.022 4.022 5 N -0.246 5.246 6 O -0.180 6.180 7 C 0.137 3.863 8 H 0.051 0.949 9 C -0.529 4.529 10 H 0.086 0.914 11 C 0.088 3.912 12 N -0.878 5.878 13 Si 0.867 3.133 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.230 1.230 17 C -0.118 4.118 18 H 0.091 0.909 19 H 0.097 0.903 20 H 0.096 0.904 21 H 0.271 0.729 22 H 0.098 0.902 23 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 6.847 -3.058 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.309 3.691 3 O -0.317 6.317 4 C -0.212 4.212 5 N 0.010 4.990 6 O -0.207 6.207 7 C 0.082 3.918 8 H 0.069 0.931 9 C -0.567 4.567 10 H 0.104 0.896 11 C -0.119 4.119 12 N -0.514 5.514 13 Si 0.692 3.308 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.153 1.153 17 C -0.157 4.157 18 H 0.110 0.890 19 H 0.115 0.885 20 H 0.114 0.886 21 H 0.080 0.920 22 H 0.116 0.884 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.016 6.555 -2.973 12.334 hybrid contribution 0.523 -0.415 -0.523 0.848 sum -9.493 6.140 -3.496 11.834 Atomic orbital electron populations 1.22179 0.92464 1.05780 1.04730 1.21692 0.91438 0.85327 0.70629 1.90553 1.72352 1.33176 1.35616 1.26303 0.97710 0.94715 1.02483 1.77969 1.20259 0.98219 1.02517 1.91554 1.18645 1.24409 1.86082 1.21841 0.84143 0.88847 0.96984 0.93143 1.20849 1.10585 0.96235 1.28982 0.89567 1.25054 0.94127 0.97714 0.94966 1.69887 1.27582 1.13379 1.40521 0.86971 0.83403 0.79818 0.80592 1.20304 1.20801 1.15327 1.22813 0.89524 0.98876 1.04479 0.89001 0.88486 0.88576 0.91969 0.88417 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 10.32 36.00 0.37 -1.72 14 2 C 0.43 6.61 7.24 -30.83 -0.22 6.39 14 3 O -0.45 -7.68 17.70 5.57 0.10 -7.58 14 4 C -0.02 -0.40 7.21 -79.67 -0.57 -0.97 14 5 N -0.25 -5.05 11.85 35.16 0.42 -4.64 14 6 O -0.18 -4.42 9.61 -11.37 -0.11 -4.53 14 7 C 0.14 3.30 2.96 -26.97 -0.08 3.22 14 8 H 0.05 1.18 7.59 -51.93 -0.39 0.79 14 9 C -0.53 -14.70 9.40 -34.44 -0.32 -15.02 14 10 H 0.09 2.54 7.88 -52.49 -0.41 2.12 14 11 C 0.09 2.50 5.47 -17.82 -0.10 2.40 14 12 N -0.88 -26.09 13.96 55.43 0.77 -25.32 14 13 Si 0.87 21.16 27.11 -169.99 -4.61 16.55 14 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 14 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 14 16 H -0.23 -5.58 5.55 56.52 0.31 -5.26 14 17 C -0.12 -2.40 6.42 -26.45 -0.17 -2.57 14 18 H 0.09 1.01 7.44 -51.93 -0.39 0.62 14 19 H 0.10 0.87 8.14 -51.93 -0.42 0.44 14 20 H 0.10 0.84 8.14 -51.93 -0.42 0.42 14 21 H 0.27 7.48 8.31 -40.82 -0.34 7.14 14 22 H 0.10 2.03 7.79 -51.93 -0.40 1.62 14 23 H 0.09 1.61 8.14 -51.93 -0.42 1.19 14 LS Contribution 212.42 15.07 3.20 3.20 Total: -1.00 -30.70 212.42 -3.41 -34.12 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -2.09 Total: -3.53 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.10 Total: -8.27 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 1.19 Total: -29.95 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.01 Total: -12.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.61 Total: 16.55 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -30.70 -3.41 -34.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039069807.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.080 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds