Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47419 * 2 1 4 4 N 1.46499 * 109.47282 * 119.99943 * 2 1 3 5 5 C 1.36290 * 125.83442 * 300.02745 * 4 2 1 6 6 N 1.28244 * 114.58980 * 180.23409 * 5 4 2 7 7 C 1.46979 * 110.18769 * 359.56245 * 6 5 4 8 8 H 1.09000 * 110.48874 * 118.95237 * 7 6 5 9 9 C 1.50700 * 110.74305 * 241.71911 * 7 6 5 10 10 H 1.07998 * 120.00104 * 114.52702 * 9 7 6 11 11 C 1.37881 * 119.99781 * 294.52086 * 9 7 6 12 12 N 1.31512 * 119.99851 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00028 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46888 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46891 * 120.00225 * 13 11 9 16 16 H 1.48501 * 109.46853 * 240.00192 * 13 11 9 17 17 C 1.47293 * 125.83372 * 119.97558 * 4 2 1 18 18 H 1.09001 * 109.46451 * 300.00274 * 1 2 3 19 19 H 1.09002 * 109.47076 * 59.99712 * 1 2 3 20 20 H 1.08992 * 109.47265 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46903 * 240.00010 * 2 1 3 22 22 H 1.09001 * 109.47074 * 60.00115 * 3 2 1 23 23 H 1.08999 * 109.47354 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46533 * 300.00018 * 3 2 1 25 25 H 1.08002 * 122.70085 * 359.95448 * 5 4 2 26 26 H 0.97009 * 119.99867 * 179.97438 * 12 11 9 27 27 H 1.09002 * 110.70225 * 298.43459 * 17 4 2 28 28 H 1.09001 * 110.69543 * 61.65041 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7631 -0.3304 2.4856 6 7 2.3042 -1.0872 3.3682 7 6 3.0603 -2.1661 2.7165 8 1 4.1152 -2.1085 2.9844 9 6 2.4947 -3.5131 3.0865 10 1 2.0362 -4.1326 2.3300 11 6 2.5628 -3.9545 4.3910 12 7 3.1208 -3.1999 5.3123 13 14 1.8624 -5.6245 4.8496 14 1 1.2945 -6.2722 3.6400 15 1 2.9423 -6.4780 5.4069 16 1 0.7942 -5.4508 5.8665 17 6 2.8683 -1.8934 1.2108 18 1 -0.3632 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.6768 1.9563 0.8900 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.1577 0.5261 2.7432 26 1 3.1683 -3.5104 6.2301 27 1 2.3611 -2.7296 0.7294 28 1 3.8262 -1.6942 0.7302 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039103054.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = 32.028177 kcal Electronic energy + Delta-G solvation = -11063.029458 eV Core-core repulsion = 9114.492095 eV Total energy + Delta-G solvation = -1948.537363 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.88161 -34.84808 -32.35492 -29.36365 -28.59578 -26.96046 -24.49822 -21.75251 -20.39710 -18.67748 -16.36711 -15.88358 -14.57263 -14.28321 -14.00886 -12.90844 -12.78906 -12.37868 -12.08034 -11.92501 -11.73275 -11.22307 -10.94826 -10.70674 -10.61859 -10.51545 -10.40283 -9.64315 -9.20545 -8.42072 -8.17889 -6.63860 -5.85041 -3.98166 3.35211 3.42579 3.45877 4.01580 4.03210 4.52946 5.08864 5.37609 5.41889 5.48566 5.72857 5.75100 5.98082 5.99942 6.04954 6.18205 6.30918 6.35086 6.51426 6.67409 7.25998 7.44606 7.77119 7.98104 8.37382 8.74203 8.95305 9.54741 9.69231 11.20058 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.073057 B = 0.010838 C = 0.010361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.167802 B = 2582.763303 C = 2701.777186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 C -0.160 4.160 4 N -0.656 5.656 5 C 0.280 3.720 6 N -0.504 5.504 7 C 0.184 3.816 8 H 0.051 0.949 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.077 3.923 12 N -0.858 5.858 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.087 3.913 18 H 0.056 0.944 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.153 0.847 26 H 0.257 0.743 27 H 0.055 0.945 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 6.248 -9.678 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 C -0.219 4.219 4 N -0.384 5.384 5 C -0.019 4.019 6 N -0.224 5.224 7 C 0.077 3.923 8 H 0.068 0.932 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.128 4.128 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.037 4.037 18 H 0.075 0.925 19 H 0.075 0.925 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.170 0.830 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.011 6.086 -8.561 10.927 hybrid contribution -0.454 -0.923 -0.559 1.170 sum -3.465 5.163 -9.120 11.038 Atomic orbital electron populations 1.22213 0.96140 1.02189 1.01444 1.20493 0.93152 0.92160 0.88115 1.22211 1.01490 0.96657 1.01537 1.48241 1.55717 1.30419 1.04035 1.24236 0.98078 0.98055 0.81564 1.74422 1.13135 1.05754 1.29134 1.20254 0.95937 0.91980 0.84177 0.93157 1.20985 1.41068 0.99810 0.94439 0.92494 1.24996 0.94604 0.96682 0.96546 1.70082 1.42048 1.35837 1.01397 0.86616 0.78891 0.84398 0.78482 1.19869 1.20990 1.21016 1.22754 0.92262 0.86596 1.02132 0.92469 0.92516 0.92404 0.90783 0.92451 0.92596 0.92453 0.83027 0.93310 0.92687 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.24 37.16 0.34 -1.74 15 2 C 0.17 2.41 3.64 -67.93 -0.25 2.16 15 3 C -0.16 -1.97 9.24 37.16 0.34 -1.63 15 4 N -0.66 -12.70 2.90 -167.55 -0.49 -13.19 15 5 C 0.28 6.05 11.12 -91.06 -1.01 5.03 15 6 N -0.50 -13.53 10.96 -56.40 -0.62 -14.15 15 7 C 0.18 4.99 3.51 -68.18 -0.24 4.75 15 8 H 0.05 1.48 8.14 -51.93 -0.42 1.06 15 9 C -0.52 -15.28 8.79 -34.44 -0.30 -15.58 15 10 H 0.06 1.63 7.39 -52.49 -0.39 1.24 15 11 C 0.08 2.28 5.43 -17.82 -0.10 2.18 15 12 N -0.86 -26.47 13.06 55.43 0.72 -25.75 15 13 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 15 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 16 H -0.28 -7.08 7.11 56.52 0.40 -6.67 15 17 C 0.09 1.91 7.38 -2.97 -0.02 1.89 15 18 H 0.06 0.75 7.92 -51.93 -0.41 0.34 15 19 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.07 1.01 8.11 -51.93 -0.42 0.59 15 22 H 0.06 0.71 7.92 -51.93 -0.41 0.30 15 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.15 2.75 8.04 -52.49 -0.42 2.33 15 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 27 H 0.05 1.21 7.47 -51.93 -0.39 0.83 15 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 240.12 15.07 3.62 3.62 Total: -1.00 -32.43 240.12 -7.13 -39.55 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.11 Total: -4.26 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.23 Total: -2.93 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.38 Total: -53.08 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.43 -7.13 -39.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039103054.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.582 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds