Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47419 * 2 1 4 4 N 1.46499 * 109.47282 * 119.99943 * 2 1 3 5 5 C 1.36290 * 125.83442 * 300.02745 * 4 2 1 6 6 N 1.28244 * 114.58980 * 180.23409 * 5 4 2 7 7 C 1.46979 * 110.18769 * 359.56245 * 6 5 4 8 8 H 1.09000 * 110.48874 * 118.95237 * 7 6 5 9 9 C 1.50700 * 110.74305 * 241.71911 * 7 6 5 10 10 H 1.07998 * 120.00104 * 114.52702 * 9 7 6 11 11 C 1.37881 * 119.99781 * 294.52086 * 9 7 6 12 12 N 1.31512 * 119.99851 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00028 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46888 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46891 * 120.00225 * 13 11 9 16 16 H 1.48501 * 109.46853 * 240.00192 * 13 11 9 17 17 C 1.47293 * 125.83372 * 119.97558 * 4 2 1 18 18 H 1.09001 * 109.46451 * 300.00274 * 1 2 3 19 19 H 1.09002 * 109.47076 * 59.99712 * 1 2 3 20 20 H 1.08992 * 109.47265 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46903 * 240.00010 * 2 1 3 22 22 H 1.09001 * 109.47074 * 60.00115 * 3 2 1 23 23 H 1.08999 * 109.47354 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46533 * 300.00018 * 3 2 1 25 25 H 1.08002 * 122.70085 * 359.95448 * 5 4 2 26 26 H 0.97009 * 119.99867 * 179.97438 * 12 11 9 27 27 H 1.09002 * 110.70225 * 298.43459 * 17 4 2 28 28 H 1.09001 * 110.69543 * 61.65041 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7631 -0.3304 2.4856 6 7 2.3042 -1.0872 3.3682 7 6 3.0603 -2.1661 2.7165 8 1 4.1152 -2.1085 2.9844 9 6 2.4947 -3.5131 3.0865 10 1 2.0362 -4.1326 2.3300 11 6 2.5628 -3.9545 4.3910 12 7 3.1208 -3.1999 5.3123 13 14 1.8624 -5.6245 4.8496 14 1 1.2945 -6.2722 3.6400 15 1 2.9423 -6.4780 5.4069 16 1 0.7942 -5.4508 5.8665 17 6 2.8683 -1.8934 1.2108 18 1 -0.3632 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.6768 1.9563 0.8900 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.1577 0.5261 2.7432 26 1 3.1683 -3.5104 6.2301 27 1 2.3611 -2.7296 0.7294 28 1 3.8262 -1.6942 0.7302 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039103054.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = 10.066229 kcal Electronic energy + Delta-G solvation = -11063.981799 eV Core-core repulsion = 9114.492095 eV Total energy + Delta-G solvation = -1949.489705 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.58861 -36.27216 -34.44851 -31.07591 -30.45650 -27.95070 -26.57193 -23.16400 -22.29055 -20.33861 -18.47216 -17.31875 -16.51797 -15.95419 -15.44260 -14.39032 -14.22954 -14.14564 -13.71485 -13.19784 -13.05942 -12.87289 -12.66610 -12.52163 -12.33657 -12.07850 -11.74760 -11.58653 -11.15262 -10.62396 -10.02897 -8.43666 -8.01088 -6.26078 1.38551 1.39929 1.51868 2.24258 2.44188 2.55494 3.21198 3.98663 4.15781 4.26099 4.27906 4.43690 4.61405 4.80482 4.85035 4.92556 4.99947 5.03104 5.27913 5.31694 5.46831 5.64958 5.72276 5.97434 6.23586 6.77652 7.14215 7.43718 7.77463 9.00630 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.073057 B = 0.010838 C = 0.010361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.167802 B = 2582.763303 C = 2701.777186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.153 4.153 4 N -0.650 5.650 5 C 0.304 3.696 6 N -0.577 5.577 7 C 0.177 3.823 8 H 0.007 0.993 9 C -0.542 4.542 10 H 0.055 0.945 11 C 0.022 3.978 12 N -0.898 5.898 13 Si 0.961 3.039 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.283 1.283 17 C 0.096 3.904 18 H 0.055 0.945 19 H 0.091 0.909 20 H 0.039 0.961 21 H 0.086 0.914 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.190 0.810 26 H 0.257 0.743 27 H 0.054 0.946 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 6.839 -11.335 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 C -0.212 4.212 4 N -0.376 5.376 5 C 0.005 3.995 6 N -0.300 5.300 7 C 0.069 3.931 8 H 0.025 0.975 9 C -0.581 4.581 10 H 0.073 0.927 11 C -0.180 4.180 12 N -0.534 5.534 13 Si 0.786 3.214 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.209 1.209 17 C -0.029 4.029 18 H 0.074 0.926 19 H 0.109 0.891 20 H 0.058 0.942 21 H 0.104 0.896 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.206 0.794 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.381 6.698 -10.284 13.032 hybrid contribution -0.047 -0.995 -0.171 1.011 sum -4.428 5.703 -10.455 12.706 Atomic orbital electron populations 1.22165 0.94533 1.01568 1.03142 1.20936 0.94356 0.93148 0.86199 1.22149 1.00821 0.95024 1.03189 1.48431 1.54649 1.29476 1.05044 1.24755 0.95694 0.97291 0.81778 1.74324 1.16670 1.07739 1.31264 1.20041 0.93634 0.92036 0.87360 0.97536 1.21367 1.40804 1.01193 0.94718 0.92683 1.25879 0.94954 1.00702 0.96490 1.70241 1.43572 1.37962 1.01663 0.85491 0.78170 0.79542 0.78239 1.18872 1.20043 1.20853 1.22473 0.93650 0.87863 0.98917 0.92563 0.89072 0.94175 0.89580 0.92477 0.93631 0.89152 0.79367 0.93375 0.92762 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.24 71.98 0.67 -2.79 15 2 C 0.16 4.01 3.64 44.99 0.16 4.17 15 3 C -0.15 -3.18 9.24 71.98 0.67 -2.52 15 4 N -0.65 -24.01 2.90 -684.01 -1.99 -26.00 15 5 C 0.30 12.77 11.12 180.50 2.01 14.78 15 6 N -0.58 -31.48 10.96 -332.34 -3.64 -35.12 15 7 C 0.18 9.92 3.51 44.57 0.16 10.07 15 8 H 0.01 0.43 8.14 -2.39 -0.02 0.41 15 9 C -0.54 -32.32 8.79 25.60 0.22 -32.09 15 10 H 0.06 3.19 7.39 -2.91 -0.02 3.16 15 11 C 0.02 1.30 5.43 84.66 0.46 1.76 15 12 N -0.90 -57.07 13.06 21.45 0.28 -56.79 15 13 Si 0.96 46.12 29.54 68.60 2.03 48.15 15 14 H -0.26 -12.14 7.11 99.48 0.71 -11.43 15 15 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 15 17 C 0.10 4.21 7.38 86.64 0.64 4.85 15 18 H 0.06 1.27 7.92 -2.39 -0.02 1.25 15 19 H 0.09 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.04 1.03 8.14 -2.39 -0.02 1.02 15 21 H 0.09 2.04 8.11 -2.39 -0.02 2.02 15 22 H 0.06 1.20 7.92 -2.39 -0.02 1.18 15 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.09 1.32 8.14 -2.39 -0.02 1.31 15 25 H 0.19 6.34 8.04 -2.91 -0.02 6.32 15 26 H 0.26 15.40 8.31 -92.70 -0.77 14.63 15 27 H 0.05 2.37 7.47 -2.39 -0.02 2.35 15 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 Total: -1.00 -72.10 240.12 2.77 -69.33 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.11 Total: 2.21 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 4.98 Total: -1.78 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.35 Total: -117.91 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.10 2.77 -69.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039103054.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.392 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds