Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 N 1.46500 * 109.47421 * 120.00022 * 2 1 3 5 5 C 1.36280 * 125.83119 * 300.02834 * 4 2 1 6 6 N 1.28249 * 114.58652 * 179.70005 * 5 4 2 7 7 C 1.46974 * 110.18780 * 0.27581 * 6 5 4 8 8 H 1.09003 * 110.54972 * 241.25769 * 7 6 5 9 9 C 1.50696 * 110.55462 * 118.58602 * 7 6 5 10 10 H 1.08007 * 119.99616 * 241.44861 * 9 7 6 11 11 C 1.37872 * 120.00649 * 61.45103 * 9 7 6 12 12 N 1.31518 * 119.99818 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00607 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.46843 * 60.00071 * 13 11 9 15 15 H 1.48502 * 109.47423 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47097 * 300.00350 * 13 11 9 17 17 C 1.47290 * 125.83360 * 120.18706 * 4 2 1 18 18 H 1.08991 * 109.47371 * 299.99604 * 1 2 3 19 19 H 1.08997 * 109.47087 * 60.00149 * 1 2 3 20 20 H 1.09001 * 109.46585 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47346 * 240.00433 * 2 1 3 22 22 H 1.09001 * 109.47355 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47267 * 300.00337 * 3 2 1 24 24 H 1.09006 * 109.47115 * 60.00292 * 3 2 1 25 25 H 1.08002 * 122.70886 * 359.97438 * 5 4 2 26 26 H 0.96993 * 120.00559 * 180.02562 * 12 11 9 27 27 H 1.09000 * 110.89941 * 61.76544 * 17 4 2 28 28 H 1.09003 * 110.65254 * 298.61754 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7631 -0.3304 2.4854 6 7 2.2954 -1.0935 3.3681 7 6 3.0576 -2.1680 2.7164 8 1 2.6482 -3.1428 2.9817 9 6 4.5143 -2.0873 3.0936 10 1 5.2616 -1.9263 2.3306 11 6 4.8933 -2.2188 4.4127 12 7 3.9833 -2.4144 5.3419 13 14 6.6990 -2.1194 4.8802 14 1 7.2414 -0.7957 4.4815 15 1 6.8404 -2.2898 6.3487 16 1 7.4509 -3.1931 4.1821 17 6 2.8719 -1.8909 1.2107 18 1 -0.3633 0.5137 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8901 25 1 1.1574 0.5259 2.7432 26 1 4.2497 -2.5066 6.2700 27 1 3.8319 -1.6912 0.7345 28 1 2.3686 -2.7265 0.7244 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039103055.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 32.918005 kcal Electronic energy + Delta-G solvation = -11072.531197 eV Core-core repulsion = 9124.032420 eV Total energy + Delta-G solvation = -1948.498777 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.87260 -34.84314 -32.33462 -29.35173 -28.59178 -26.95422 -24.48470 -21.74311 -20.38997 -18.67813 -16.33776 -15.87151 -14.55558 -14.29705 -13.99948 -12.91010 -12.77881 -12.36605 -12.07324 -11.89974 -11.73748 -11.21460 -10.92762 -10.68542 -10.61271 -10.53182 -10.40311 -9.65220 -9.21617 -8.38575 -8.16000 -6.62377 -5.82700 -3.96629 3.37923 3.42398 3.44230 4.02682 4.04832 4.53737 5.09531 5.38406 5.43431 5.49175 5.73805 5.75708 5.98651 6.00413 6.05362 6.18252 6.31309 6.35577 6.51918 6.67435 7.25774 7.45198 7.78179 7.98668 8.37903 8.75307 8.94811 9.56515 9.70687 11.21882 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.072648 B = 0.010900 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.327768 B = 2568.103652 C = 2680.432935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.161 4.161 4 N -0.656 5.656 5 C 0.279 3.721 6 N -0.499 5.499 7 C 0.185 3.815 8 H 0.048 0.952 9 C -0.529 4.529 10 H 0.056 0.944 11 C 0.079 3.921 12 N -0.855 5.855 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.087 3.913 18 H 0.056 0.944 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.153 0.847 26 H 0.258 0.742 27 H 0.055 0.945 28 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 4.923 -9.644 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 C -0.220 4.220 4 N -0.384 5.384 5 C -0.021 4.021 6 N -0.219 5.219 7 C 0.077 3.923 8 H 0.066 0.934 9 C -0.567 4.567 10 H 0.074 0.926 11 C -0.128 4.128 12 N -0.490 5.490 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.037 4.037 18 H 0.076 0.924 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.170 0.830 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.728 4.692 -8.512 10.808 hybrid contribution 1.045 0.133 -0.583 1.204 sum -3.683 4.825 -9.094 10.934 Atomic orbital electron populations 1.22208 0.96189 1.01951 1.01533 1.20490 0.92987 0.92316 0.88122 1.22215 1.01760 0.96581 1.01435 1.48236 1.55561 1.30578 1.04035 1.24257 0.97479 0.98823 0.81537 1.74436 1.11207 1.07296 1.28925 1.20239 0.95034 0.92826 0.84198 0.93404 1.20905 0.89877 1.52862 0.93098 0.92589 1.24985 0.96855 0.94319 0.96595 1.70073 1.32325 1.46138 1.00457 0.86754 0.85874 0.78484 0.77320 1.20404 1.21256 1.20271 1.22736 0.92790 0.86108 1.02069 0.92448 0.92462 0.92602 0.90802 0.92412 0.92529 0.92469 0.83033 0.93255 0.92714 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.24 37.16 0.34 -1.63 15 2 C 0.17 2.42 3.64 -67.93 -0.25 2.17 15 3 C -0.16 -2.10 9.24 37.16 0.34 -1.76 15 4 N -0.66 -12.74 2.90 -167.56 -0.49 -13.23 15 5 C 0.28 6.04 11.12 -91.07 -1.01 5.03 15 6 N -0.50 -13.42 10.71 -56.41 -0.60 -14.02 15 7 C 0.18 5.01 3.59 -68.19 -0.24 4.76 15 8 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15 9 C -0.53 -15.42 8.80 -34.44 -0.30 -15.72 15 10 H 0.06 1.59 7.39 -52.48 -0.39 1.20 15 11 C 0.08 2.31 5.41 -17.82 -0.10 2.22 15 12 N -0.85 -26.38 12.88 55.43 0.71 -25.67 15 13 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 15 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 C 0.09 1.93 7.38 -2.98 -0.02 1.90 15 18 H 0.06 0.71 7.92 -51.93 -0.41 0.30 15 19 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.07 1.01 8.11 -51.93 -0.42 0.59 15 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 15 24 H 0.06 0.75 7.92 -51.93 -0.41 0.34 15 25 H 0.15 2.77 8.04 -52.49 -0.42 2.35 15 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 27 H 0.05 1.21 7.47 -51.93 -0.39 0.82 15 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 LS Contribution 239.77 15.07 3.61 3.61 Total: -1.00 -32.39 239.77 -7.14 -39.53 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -4.11 Total: -4.30 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.24 Total: -3.03 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.38 Total: -52.92 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.39 -7.14 -39.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039103055.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.444 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds