Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 N 1.46500 * 109.47421 * 120.00022 * 2 1 3 5 5 C 1.36280 * 125.83119 * 300.02834 * 4 2 1 6 6 N 1.28249 * 114.58652 * 179.70005 * 5 4 2 7 7 C 1.46974 * 110.18780 * 0.27581 * 6 5 4 8 8 H 1.09003 * 110.54972 * 241.25769 * 7 6 5 9 9 C 1.50696 * 110.55462 * 118.58602 * 7 6 5 10 10 H 1.08007 * 119.99616 * 241.44861 * 9 7 6 11 11 C 1.37872 * 120.00649 * 61.45103 * 9 7 6 12 12 N 1.31518 * 119.99818 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00607 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.46843 * 60.00071 * 13 11 9 15 15 H 1.48502 * 109.47423 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47097 * 300.00350 * 13 11 9 17 17 C 1.47290 * 125.83360 * 120.18706 * 4 2 1 18 18 H 1.08991 * 109.47371 * 299.99604 * 1 2 3 19 19 H 1.08997 * 109.47087 * 60.00149 * 1 2 3 20 20 H 1.09001 * 109.46585 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47346 * 240.00433 * 2 1 3 22 22 H 1.09001 * 109.47355 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47267 * 300.00337 * 3 2 1 24 24 H 1.09006 * 109.47115 * 60.00292 * 3 2 1 25 25 H 1.08002 * 122.70886 * 359.97438 * 5 4 2 26 26 H 0.96993 * 120.00559 * 180.02562 * 12 11 9 27 27 H 1.09000 * 110.89941 * 61.76544 * 17 4 2 28 28 H 1.09003 * 110.65254 * 298.61754 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7631 -0.3304 2.4854 6 7 2.2954 -1.0935 3.3681 7 6 3.0576 -2.1680 2.7164 8 1 2.6482 -3.1428 2.9817 9 6 4.5143 -2.0873 3.0936 10 1 5.2616 -1.9263 2.3306 11 6 4.8933 -2.2188 4.4127 12 7 3.9833 -2.4144 5.3419 13 14 6.6990 -2.1194 4.8802 14 1 7.2414 -0.7957 4.4815 15 1 6.8404 -2.2898 6.3487 16 1 7.4509 -3.1931 4.1821 17 6 2.8719 -1.8909 1.2107 18 1 -0.3633 0.5137 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8901 25 1 1.1574 0.5259 2.7432 26 1 4.2497 -2.5066 6.2700 27 1 3.8319 -1.6912 0.7345 28 1 2.3686 -2.7265 0.7244 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039103055.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 11.095941 kcal Electronic energy + Delta-G solvation = -11073.477473 eV Core-core repulsion = 9124.032420 eV Total energy + Delta-G solvation = -1949.445053 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.58225 -36.27108 -34.42802 -31.06906 -30.45251 -27.95010 -26.55790 -23.15921 -22.28522 -20.34445 -18.43700 -17.31171 -16.51538 -15.95602 -15.43882 -14.38101 -14.22982 -14.14188 -13.69633 -13.20389 -13.06029 -12.85017 -12.64394 -12.50852 -12.35886 -12.08922 -11.74587 -11.59638 -11.15978 -10.59246 -10.00618 -8.42038 -7.99147 -6.24658 1.38884 1.42412 1.49706 2.25679 2.44633 2.56154 3.22619 3.98775 4.16243 4.25939 4.27856 4.43816 4.61558 4.80483 4.85026 4.92522 5.00103 5.03164 5.27951 5.31437 5.46869 5.65532 5.73084 5.98124 6.24035 6.77321 7.14771 7.44937 7.79023 9.01950 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.072648 B = 0.010900 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.327768 B = 2568.103652 C = 2680.432935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 C -0.156 4.156 4 N -0.650 5.650 5 C 0.302 3.698 6 N -0.571 5.571 7 C 0.177 3.823 8 H 0.005 0.995 9 C -0.548 4.548 10 H 0.055 0.945 11 C 0.023 3.977 12 N -0.893 5.893 13 Si 0.960 3.040 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.097 3.903 18 H 0.056 0.944 19 H 0.090 0.910 20 H 0.045 0.955 21 H 0.086 0.914 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.189 0.811 26 H 0.257 0.743 27 H 0.054 0.946 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 6.348 -11.312 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 C -0.214 4.214 4 N -0.376 5.376 5 C 0.003 3.997 6 N -0.294 5.294 7 C 0.069 3.931 8 H 0.023 0.977 9 C -0.586 4.586 10 H 0.074 0.926 11 C -0.179 4.179 12 N -0.529 5.529 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.189 1.189 17 C -0.029 4.029 18 H 0.075 0.925 19 H 0.108 0.892 20 H 0.064 0.936 21 H 0.104 0.896 22 H 0.058 0.942 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.205 0.795 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.826 6.136 -10.247 12.882 hybrid contribution 0.973 -0.262 -0.192 1.026 sum -3.853 5.874 -10.439 12.583 Atomic orbital electron populations 1.22145 0.94007 1.01843 1.03172 1.20932 0.94617 0.92862 0.86218 1.22167 1.00591 0.95540 1.03118 1.48423 1.54436 1.29728 1.05026 1.24765 0.95166 0.98023 0.81785 1.74342 1.14829 1.09165 1.31068 1.20039 0.94050 0.91601 0.87394 0.97682 1.21317 0.91370 1.52496 0.93449 0.92642 1.25865 1.01600 0.93915 0.96553 1.70243 1.34642 1.47442 1.00613 0.85627 0.80102 0.78773 0.77087 1.19958 1.20825 1.18935 1.22458 0.93627 0.87907 0.98862 0.92506 0.89155 0.93615 0.89568 0.94196 0.89070 0.92607 0.79453 0.93447 0.92787 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.24 71.98 0.67 -2.53 15 2 C 0.16 4.03 3.64 44.99 0.16 4.20 15 3 C -0.16 -3.49 9.24 71.98 0.67 -2.83 15 4 N -0.65 -24.11 2.90 -684.03 -1.99 -26.09 15 5 C 0.30 12.76 11.12 180.50 2.01 14.77 15 6 N -0.57 -31.28 10.71 -332.37 -3.56 -34.83 15 7 C 0.18 9.92 3.59 44.57 0.16 10.07 15 8 H 0.01 0.34 8.14 -2.39 -0.02 0.32 15 9 C -0.55 -32.66 8.80 25.60 0.23 -32.43 15 10 H 0.06 3.19 7.39 -2.91 -0.02 3.17 15 11 C 0.02 1.38 5.41 84.65 0.46 1.84 15 12 N -0.89 -56.79 12.88 21.45 0.28 -56.51 15 13 Si 0.96 46.08 29.54 68.60 2.03 48.11 15 14 H -0.27 -12.87 7.11 99.48 0.71 -12.17 15 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 16 H -0.26 -12.05 7.11 99.48 0.71 -11.34 15 17 C 0.10 4.23 7.38 86.64 0.64 4.87 15 18 H 0.06 1.20 7.92 -2.39 -0.02 1.18 15 19 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.09 2.05 8.11 -2.38 -0.02 2.03 15 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.05 1.27 7.92 -2.38 -0.02 1.25 15 25 H 0.19 6.39 8.04 -2.91 -0.02 6.36 15 26 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 27 H 0.05 2.36 7.47 -2.39 -0.02 2.34 15 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 Total: -1.00 -71.94 239.77 2.86 -69.09 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.11 Total: 2.29 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.98 Total: -2.05 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.27 Total: -117.44 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -71.94 2.86 -69.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039103055.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.182 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds