Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48499 * 109.47118 * 240.00410 * 3 2 1 5 5 H 1.48497 * 109.47162 * 120.00292 * 3 2 1 6 6 H 1.48502 * 109.47079 * 0.02562 * 3 2 1 7 7 C 1.37878 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47156 * 175.06726 * 9 7 2 11 11 H 1.09001 * 109.96858 * 306.73345 * 10 9 7 12 12 C 1.54276 * 109.97997 * 68.00283 * 10 9 7 13 13 C 1.55055 * 103.71850 * 142.44890 * 12 10 9 14 14 C 1.54891 * 102.35386 * 322.95909 * 13 12 10 15 15 C 1.51441 * 109.98292 * 185.46064 * 10 9 7 16 16 N 1.28008 * 126.34131 * 60.99509 * 15 10 9 17 17 N 1.40097 * 120.00123 * 6.15210 * 16 15 10 18 18 H 0.97003 * 119.99723 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.47391 * 295.06554 * 9 7 2 20 20 H 1.08994 * 109.47246 * 55.06709 * 9 7 2 21 21 H 1.09003 * 110.56932 * 261.03820 * 12 10 9 22 22 H 1.09000 * 110.57683 * 23.90907 * 12 10 9 23 23 H 1.09001 * 110.83739 * 204.73340 * 13 12 10 24 24 H 1.08998 * 110.97167 * 81.24652 * 13 12 10 25 25 H 1.08999 * 110.43927 * 278.86127 * 14 13 12 26 26 H 1.08999 * 110.43650 * 156.34492 * 14 13 12 27 27 H 0.97011 * 120.00117 * 175.39206 * 17 16 15 28 28 H 0.96994 * 120.00398 * 355.38710 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1029 1.6964 1.2124 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2407 -3.6594 -0.1252 11 1 2.8851 -3.5076 -0.9912 12 6 3.0945 -3.7640 1.1555 13 6 3.2593 -5.2916 1.3639 14 6 1.8790 -5.8373 0.9208 15 6 1.4900 -4.9676 -0.2615 16 7 0.6777 -5.2818 -1.1996 17 7 0.5110 -4.4275 -2.2973 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6928 -2.5964 0.9305 20 1 0.5595 -2.5194 -0.8427 21 1 4.0650 -3.2900 1.0086 22 1 2.5727 -3.3163 2.0014 23 1 3.4487 -5.5217 2.4123 24 1 4.0539 -5.6881 0.7319 25 1 1.1519 -5.7325 1.7260 26 1 1.9624 -6.8802 0.6152 27 1 -0.0530 -4.6959 -3.0396 28 1 0.9594 -3.5676 -2.3152 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039111505.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -11.758519 kcal Electronic energy + Delta-G solvation = -11075.086454 eV Core-core repulsion = 9124.650357 eV Total energy + Delta-G solvation = -1950.436097 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.92757 -36.15836 -35.44637 -31.90912 -30.72365 -27.47804 -26.21433 -23.92381 -21.58440 -19.79011 -18.94101 -17.66461 -17.25019 -16.02029 -15.60718 -14.95179 -14.42987 -14.20100 -14.07242 -13.50422 -13.00373 -12.76035 -12.57684 -12.04377 -11.95899 -11.82887 -11.48571 -11.30271 -11.10466 -10.55142 -10.36593 -9.00600 -8.67863 -6.38766 1.38830 1.51779 1.59903 1.78803 2.42870 2.56386 3.15917 3.79302 3.94364 4.13916 4.20598 4.47864 4.61727 4.76870 4.82677 5.00714 5.08132 5.18736 5.26898 5.33592 5.37988 5.55154 5.71638 5.98919 6.17836 6.56137 6.86654 7.42841 7.52381 8.71082 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.047201 B = 0.012582 C = 0.010704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.066159 B = 2224.779022 C = 2615.196665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.041 4.041 3 Si 1.117 2.883 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.605 4.605 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.071 4.071 11 H 0.055 0.945 12 C -0.102 4.102 13 C -0.107 4.107 14 C -0.056 4.056 15 C 0.048 3.952 16 N -0.255 5.255 17 N -0.794 5.794 18 H 0.251 0.749 19 H -0.022 1.022 20 H -0.007 1.007 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.418 0.582 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -8.804 1.073 11.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.938 3.062 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.213 1.213 7 C -0.643 4.643 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.093 4.093 11 H 0.073 0.927 12 C -0.140 4.140 13 C -0.145 4.145 14 C -0.095 4.095 15 C -0.148 4.148 16 N -0.063 5.063 17 N -0.448 5.448 18 H 0.060 0.940 19 H -0.003 1.003 20 H 0.011 0.989 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.117 0.883 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.252 0.748 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.836 -7.928 0.742 9.872 hybrid contribution -0.032 -0.440 -0.431 0.617 sum 5.804 -8.368 0.311 10.189 Atomic orbital electron populations 1.70934 1.08087 1.29546 1.49131 1.27428 0.96538 1.06910 0.92939 0.82937 0.74089 0.71063 0.78094 1.19394 1.19223 1.21265 1.22395 0.94668 0.92771 1.54435 0.92706 1.19146 0.94373 0.93884 0.93855 1.21129 0.96751 0.92133 0.99252 0.92688 1.22198 0.98793 0.97388 0.95619 1.22534 0.95786 0.93299 1.02874 1.21203 0.97724 0.98120 0.92478 1.25576 0.95169 0.97136 0.96924 1.73184 1.14623 1.20731 0.97730 1.45586 1.59838 1.20169 1.19180 0.93955 1.00335 0.98867 0.91576 0.92836 0.88311 0.90020 0.89751 0.88591 0.74778 0.79356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.65 21.45 0.29 -58.83 15 2 C -0.04 -2.39 5.46 84.65 0.46 -1.93 15 3 Si 1.12 50.21 29.90 68.60 2.05 52.26 15 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 6 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 7 C -0.60 -34.10 8.71 25.60 0.22 -33.88 15 8 H 0.05 2.98 7.65 -2.91 -0.02 2.96 15 9 C 0.03 1.34 3.51 29.85 0.10 1.44 15 10 C -0.07 -2.98 1.98 -10.87 -0.02 -3.00 15 11 H 0.05 2.38 8.11 -2.39 -0.02 2.36 15 12 C -0.10 -3.57 5.91 31.73 0.19 -3.38 15 13 C -0.11 -2.69 6.95 31.94 0.22 -2.46 15 14 C -0.06 -1.56 6.72 30.86 0.21 -1.35 15 15 C 0.05 1.81 6.79 47.13 0.32 2.13 15 16 N -0.26 -9.98 11.86 -39.76 -0.47 -10.45 15 17 N -0.79 -29.90 9.85 37.02 0.36 -29.53 15 18 H 0.25 16.23 7.19 -92.71 -0.67 15.57 15 19 H -0.02 -1.24 8.00 -2.39 -0.02 -1.26 15 20 H -0.01 -0.38 5.73 -2.39 -0.01 -0.40 15 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.05 2.05 7.76 -2.39 -0.02 2.03 15 23 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.42 13.12 8.96 -213.31 -1.91 11.21 15 28 H 0.38 15.41 6.34 -213.33 -1.35 14.06 15 Total: -1.00 -67.10 233.07 1.94 -65.16 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -2.00 Total: 23.83 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 1.71 Total: -42.44 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: 0.19 Total: -98.81 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -67.10 1.94 -65.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111505.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.400 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds