Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47104 * 300.00038 * 3 2 1 6 6 H 1.48503 * 109.47148 * 59.99821 * 3 2 1 7 7 C 1.37878 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47027 * 175.67042 * 9 7 2 11 11 H 1.08993 * 110.00789 * 55.88280 * 10 9 7 12 12 C 1.54279 * 109.98201 * 294.58730 * 10 9 7 13 13 C 1.54992 * 103.75081 * 217.52963 * 12 10 9 14 14 C 1.54884 * 102.33027 * 37.08792 * 13 12 10 15 15 C 1.51452 * 109.98393 * 177.17773 * 10 9 7 16 16 N 1.28010 * 126.33485 * 298.96854 * 15 10 9 17 17 N 1.40094 * 120.00632 * 355.49173 * 16 15 10 18 18 H 0.96997 * 119.99642 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.46985 * 55.66536 * 9 7 2 20 20 H 1.09001 * 109.47076 * 295.66742 * 9 7 2 21 21 H 1.09000 * 110.57576 * 336.09645 * 12 10 9 22 22 H 1.09002 * 110.57157 * 98.96669 * 12 10 9 23 23 H 1.09003 * 110.82841 * 155.29576 * 13 12 10 24 24 H 1.09000 * 110.83169 * 278.87579 * 13 12 10 25 25 H 1.09008 * 110.44440 * 81.11386 * 14 13 12 26 26 H 1.09002 * 110.43869 * 203.63373 * 14 13 12 27 27 H 0.96998 * 119.99981 * 352.94302 * 17 16 15 28 28 H 0.96995 * 120.00463 * 172.93592 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2417 -3.6599 -0.1110 11 1 2.9745 -3.6019 0.6938 12 6 2.9555 -3.6169 -1.4781 13 6 3.0897 -5.1103 -1.8707 14 6 1.7604 -5.7102 -1.3492 15 6 1.5021 -4.9798 -0.0434 16 7 0.7911 -5.4017 0.9340 17 7 0.7182 -4.6584 2.1193 18 1 -0.4849 0.8400 0.0004 19 1 0.5678 -2.5234 -0.8505 20 1 0.6835 -2.5919 0.9243 21 1 2.3502 -3.0816 -2.2096 22 1 3.9387 -3.1563 -1.3825 23 1 3.1671 -5.2212 -2.9523 24 1 3.9438 -5.5672 -1.3709 25 1 0.9536 -5.5209 -2.0573 26 1 1.8693 -6.7802 -1.1719 27 1 1.2841 -3.8798 2.2391 28 1 0.1019 -4.9224 2.8202 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039111506.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = 12.546237 kcal Electronic energy + Delta-G solvation = -11041.662171 eV Core-core repulsion = 9092.280007 eV Total energy + Delta-G solvation = -1949.382163 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.27593 -34.54016 -33.05911 -30.22992 -29.15570 -25.99433 -24.59757 -21.80009 -20.00183 -18.12250 -16.54842 -16.00841 -15.28096 -14.76606 -14.19178 -12.95838 -12.73739 -12.43653 -12.04768 -11.62422 -11.44409 -10.96037 -10.87218 -10.54528 -10.49344 -10.19600 -9.77038 -9.58035 -9.24945 -8.69999 -8.36429 -7.35670 -6.01093 -4.03815 3.02787 3.29133 3.37104 3.40761 3.96977 4.44395 5.24092 5.34889 5.42590 5.55909 5.73605 6.05893 6.12107 6.23566 6.32273 6.42311 6.55422 6.83275 6.95354 7.11268 7.24813 7.66579 7.78593 7.98065 8.35836 8.39385 9.02922 9.18217 9.60142 11.09682 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.047021 B = 0.012494 C = 0.010696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.337309 B = 2240.596401 C = 2617.137340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.032 3.968 10 C -0.080 4.080 11 H 0.061 0.939 12 C -0.100 4.100 13 C -0.125 4.125 14 C -0.057 4.057 15 C 0.059 3.941 16 N -0.245 5.245 17 N -0.791 5.791 18 H 0.259 0.741 19 H 0.020 0.980 20 H 0.018 0.982 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.382 0.618 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -7.654 -1.361 8.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.102 4.102 11 H 0.079 0.921 12 C -0.138 4.138 13 C -0.163 4.163 14 C -0.097 4.097 15 C -0.137 4.137 16 N -0.052 5.052 17 N -0.444 5.444 18 H 0.069 0.931 19 H 0.039 0.961 20 H 0.036 0.964 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.214 0.786 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.603 -8.316 -1.049 9.123 hybrid contribution 0.743 2.007 0.321 2.164 sum 4.346 -6.309 -0.728 7.695 Atomic orbital electron populations 1.69989 1.06037 1.26426 1.50858 1.25029 0.94806 0.99206 0.95425 0.86567 0.80124 0.83943 0.77561 1.19739 1.21029 1.21116 1.21256 0.92988 0.90774 1.50416 0.92572 1.19151 0.93424 0.90428 0.97605 1.21352 0.98102 0.93269 0.97441 0.92053 1.22221 1.00292 0.94219 0.97088 1.22565 0.96391 0.97339 1.00031 1.21041 0.98015 0.98304 0.92338 1.25078 0.97769 0.96515 0.94386 1.73241 1.15942 1.21568 0.94452 1.45446 1.49999 1.34313 1.14612 0.93098 0.96113 0.96378 0.90816 0.92087 0.91476 0.91914 0.90163 0.91340 0.78575 0.76189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.52 -14.24 8.60 -34.44 -0.30 -14.54 15 8 H 0.06 1.51 7.71 -52.48 -0.40 1.10 15 9 C 0.03 0.82 4.18 -27.88 -0.12 0.70 15 10 C -0.08 -1.67 1.99 -90.73 -0.18 -1.85 15 11 H 0.06 1.30 8.05 -51.93 -0.42 0.88 15 12 C -0.10 -1.83 5.87 -25.01 -0.15 -1.97 15 13 C -0.13 -1.81 6.95 -24.69 -0.17 -1.98 15 14 C -0.06 -0.89 6.72 -26.33 -0.18 -1.07 15 15 C 0.06 1.13 6.80 -77.98 -0.53 0.60 15 16 N -0.24 -4.86 11.86 36.06 0.43 -4.43 15 17 N -0.79 -14.69 9.60 60.35 0.58 -14.11 15 18 H 0.26 7.35 8.31 -40.82 -0.34 7.02 15 19 H 0.02 0.58 8.06 -51.93 -0.42 0.16 15 20 H 0.02 0.49 6.17 -51.93 -0.32 0.17 15 21 H 0.07 1.45 7.80 -51.93 -0.40 1.04 15 22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.08 1.22 8.14 -51.92 -0.42 0.79 15 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.38 7.41 6.68 -182.60 -1.22 6.20 15 28 H 0.41 6.39 8.96 -182.61 -1.64 4.75 15 LS Contribution 234.62 15.07 3.54 3.54 Total: -1.00 -30.46 234.62 -7.53 -37.99 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.07 Total: 5.23 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.72 Total: -18.60 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 1.74 Total: -44.62 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.46 -7.53 -37.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111506.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.537 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds