Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47104 * 300.00038 * 3 2 1 6 6 H 1.48503 * 109.47148 * 59.99821 * 3 2 1 7 7 C 1.37878 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47027 * 175.67042 * 9 7 2 11 11 H 1.08993 * 110.00789 * 55.88280 * 10 9 7 12 12 C 1.54279 * 109.98201 * 294.58730 * 10 9 7 13 13 C 1.54992 * 103.75081 * 217.52963 * 12 10 9 14 14 C 1.54884 * 102.33027 * 37.08792 * 13 12 10 15 15 C 1.51452 * 109.98393 * 177.17773 * 10 9 7 16 16 N 1.28010 * 126.33485 * 298.96854 * 15 10 9 17 17 N 1.40094 * 120.00632 * 355.49173 * 16 15 10 18 18 H 0.96997 * 119.99642 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.46985 * 55.66536 * 9 7 2 20 20 H 1.09001 * 109.47076 * 295.66742 * 9 7 2 21 21 H 1.09000 * 110.57576 * 336.09645 * 12 10 9 22 22 H 1.09002 * 110.57157 * 98.96669 * 12 10 9 23 23 H 1.09003 * 110.82841 * 155.29576 * 13 12 10 24 24 H 1.09000 * 110.83169 * 278.87579 * 13 12 10 25 25 H 1.09008 * 110.44440 * 81.11386 * 14 13 12 26 26 H 1.09002 * 110.43869 * 203.63373 * 14 13 12 27 27 H 0.96998 * 119.99981 * 352.94302 * 17 16 15 28 28 H 0.96995 * 120.00463 * 172.93592 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2417 -3.6599 -0.1110 11 1 2.9745 -3.6019 0.6938 12 6 2.9555 -3.6169 -1.4781 13 6 3.0897 -5.1103 -1.8707 14 6 1.7604 -5.7102 -1.3492 15 6 1.5021 -4.9798 -0.0434 16 7 0.7911 -5.4017 0.9340 17 7 0.7182 -4.6584 2.1193 18 1 -0.4849 0.8400 0.0004 19 1 0.5678 -2.5234 -0.8505 20 1 0.6835 -2.5919 0.9243 21 1 2.3502 -3.0816 -2.2096 22 1 3.9387 -3.1563 -1.3825 23 1 3.1671 -5.2212 -2.9523 24 1 3.9438 -5.5672 -1.3709 25 1 0.9536 -5.5209 -2.0573 26 1 1.8693 -6.7802 -1.1719 27 1 1.2841 -3.8798 2.2391 28 1 0.1019 -4.9224 2.8202 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039111506.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = -7.646065 kcal Electronic energy + Delta-G solvation = -11042.537774 eV Core-core repulsion = 9092.280007 eV Total energy + Delta-G solvation = -1950.257767 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.79373 -36.03464 -35.10387 -32.06453 -30.63271 -27.74495 -26.27000 -23.62846 -21.43962 -19.66782 -18.57806 -17.52447 -16.91602 -16.62989 -15.73886 -14.59910 -14.42330 -13.95440 -13.76646 -13.44759 -13.07738 -12.75948 -12.59834 -12.29210 -11.84875 -11.68196 -11.47788 -11.39219 -11.12571 -10.55583 -10.41265 -8.87851 -8.18963 -6.29519 1.38981 1.39711 1.49678 1.53470 2.40517 2.53674 3.14307 3.89918 4.05073 4.26293 4.30568 4.58691 4.72925 4.90960 4.95597 5.11234 5.22208 5.35427 5.37644 5.49201 5.54496 5.67238 5.83375 5.85990 6.24250 6.86582 6.96936 7.39350 7.64077 8.92490 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.047021 B = 0.012494 C = 0.010696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.337309 B = 2240.596401 C = 2617.137340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.042 3.958 10 C -0.077 4.077 11 H 0.057 0.943 12 C -0.102 4.102 13 C -0.108 4.108 14 C -0.056 4.056 15 C 0.050 3.950 16 N -0.258 5.258 17 N -0.793 5.793 18 H 0.261 0.739 19 H -0.015 1.015 20 H -0.005 1.005 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.376 0.624 28 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -8.164 -2.019 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.003 3.997 10 C -0.098 4.098 11 H 0.075 0.925 12 C -0.140 4.140 13 C -0.146 4.146 14 C -0.096 4.096 15 C -0.146 4.146 16 N -0.065 5.065 17 N -0.446 5.446 18 H 0.070 0.930 19 H 0.003 0.997 20 H 0.014 0.986 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.115 0.885 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.207 0.793 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.157 -8.847 -1.700 10.381 hybrid contribution 0.220 2.164 0.560 2.246 sum 5.378 -6.682 -1.140 8.653 Atomic orbital electron populations 1.70128 1.07855 1.27476 1.52087 1.25958 0.95647 1.03254 0.95015 0.85434 0.79235 0.79027 0.77570 1.18362 1.20576 1.20759 1.21621 0.93403 0.91742 1.49724 0.91971 1.18958 0.93613 0.92293 0.94788 1.21237 0.97119 0.92377 0.99102 0.92522 1.22183 0.99608 0.97344 0.94843 1.22530 0.96321 0.93714 1.02045 1.21193 0.98756 0.99470 0.90170 1.25557 0.97099 0.96238 0.95702 1.73234 1.16249 1.22110 0.94910 1.45497 1.50249 1.34037 1.14851 0.93007 0.99704 0.98645 0.92832 0.91574 0.88546 0.90090 0.89817 0.88796 0.79265 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 15 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 15 3 Si 0.96 44.09 29.54 68.60 2.03 46.12 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 7 C -0.53 -29.37 8.60 25.60 0.22 -29.15 15 8 H 0.06 3.32 7.71 -2.91 -0.02 3.29 15 9 C 0.04 2.19 4.18 29.85 0.12 2.32 15 10 C -0.08 -3.19 1.99 -10.87 -0.02 -3.21 15 11 H 0.06 2.38 8.05 -2.39 -0.02 2.36 15 12 C -0.10 -3.57 5.87 31.71 0.19 -3.38 15 13 C -0.11 -2.75 6.95 31.92 0.22 -2.53 15 14 C -0.06 -1.60 6.72 30.85 0.21 -1.40 15 15 C 0.05 1.89 6.80 47.13 0.32 2.21 15 16 N -0.26 -10.09 11.86 -39.75 -0.47 -10.56 15 17 N -0.79 -29.63 9.60 37.02 0.36 -29.27 15 18 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 19 H -0.02 -0.92 8.06 -2.39 -0.02 -0.94 15 20 H 0.00 -0.26 6.17 -2.39 -0.01 -0.28 15 21 H 0.05 2.08 7.80 -2.39 -0.02 2.06 15 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.08 2.35 8.14 -2.38 -0.02 2.33 15 26 H 0.09 2.23 8.14 -2.39 -0.02 2.22 15 27 H 0.38 14.90 6.68 -213.33 -1.42 13.47 15 28 H 0.42 13.17 8.96 -213.33 -1.91 11.25 15 Total: -1.00 -65.56 234.62 1.74 -63.83 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -2.18 Total: 21.59 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 1.72 Total: -34.76 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: 0.17 Total: -96.78 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.56 1.74 -63.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111506.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.179 kcal (2) G-P(sol) polarization free energy of solvation -65.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds