Wall clock time and date at job start Mon Mar 30 2020 02:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 110.53397 * 2 1 4 4 C 1.54893 * 110.48661 * 237.39107 * 2 1 3 5 5 C 1.54892 * 102.74606 * 203.37674 * 4 2 1 6 6 C 1.54264 * 104.19560 * 37.93738 * 5 4 2 7 7 H 1.09004 * 110.07745 * 217.08327 * 6 5 4 8 8 C 1.50703 * 110.02971 * 95.67576 * 6 5 4 9 9 H 1.08006 * 120.00159 * 242.83078 * 8 6 5 10 10 C 1.37877 * 120.00120 * 62.83448 * 8 6 5 11 11 N 1.31514 * 120.00089 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99938 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.53874 * 106.60177 * 336.39251 * 6 5 4 17 17 C 1.53004 * 110.03551 * 119.28308 * 16 6 5 18 18 C 1.53004 * 110.03117 * 240.66656 * 16 6 5 19 19 H 1.08996 * 109.47387 * 297.38644 * 1 2 3 20 20 H 1.09002 * 109.47452 * 57.38726 * 1 2 3 21 21 H 1.08998 * 109.46936 * 177.38736 * 1 2 3 22 22 H 1.08998 * 110.74849 * 321.68714 * 4 2 1 23 23 H 1.08999 * 110.75571 * 84.87591 * 4 2 1 24 24 H 1.08994 * 110.48526 * 279.26493 * 5 4 2 25 25 H 1.08999 * 110.48464 * 156.61454 * 5 4 2 26 26 H 0.96998 * 119.99255 * 0.02562 * 11 10 8 27 27 H 1.09004 * 109.46937 * 59.99787 * 17 16 6 28 28 H 1.08994 * 109.47164 * 179.97438 * 17 16 6 29 29 H 1.09000 * 109.47092 * 300.00061 * 17 16 6 30 30 H 1.08993 * 109.47176 * 59.99599 * 18 16 6 31 31 H 1.09004 * 109.46831 * 180.02562 * 18 16 6 32 32 H 1.09004 * 109.47219 * 299.99493 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 -1.2223 5 6 3.4908 -1.1978 -0.7600 6 6 3.3166 -1.5403 0.7340 7 1 4.1927 -1.2175 1.2965 8 6 3.1130 -3.0239 0.9031 9 1 2.1874 -3.3985 1.3147 10 6 4.1084 -3.9031 0.5325 11 7 5.2353 -3.4470 0.0310 12 14 3.8556 -5.7420 0.7415 13 1 4.3318 -6.1576 2.0854 14 1 4.6225 -6.4689 -0.3020 15 1 2.4117 -6.0617 0.6074 16 6 2.0699 -0.7788 1.2172 17 6 1.0139 -1.7661 1.7181 18 6 2.4505 0.1933 2.3358 19 1 -0.3634 0.4727 0.9124 20 1 -0.3634 0.5539 -0.8656 21 1 -0.3633 -1.0266 -0.0468 22 1 1.4581 -1.6600 -1.4222 23 1 2.1220 -0.1389 -2.1010 24 1 4.1897 -0.3706 -0.8827 25 1 3.8316 -2.0721 -1.3146 26 1 5.3663 -2.4921 -0.0778 27 1 1.4225 -2.3463 2.5456 28 1 0.1358 -1.2174 2.0583 29 1 0.7315 -2.4382 0.9078 30 1 3.1843 0.9075 1.9625 31 1 1.5613 0.7271 2.6713 32 1 2.8767 -0.3626 3.1709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039111513.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:27 Heat of formation + Delta-G solvation = -27.350135 kcal Electronic energy + Delta-G solvation = -11914.030371 eV Core-core repulsion = 10066.458514 eV Total energy + Delta-G solvation = -1847.571857 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.77303 -33.12649 -31.27785 -29.86715 -27.11613 -25.02789 -23.26556 -22.71110 -19.43609 -17.64759 -16.12804 -14.86001 -14.16994 -13.58029 -13.43918 -13.09937 -12.42168 -12.28933 -11.91970 -11.45892 -11.24785 -10.87273 -10.74466 -10.32938 -10.20859 -10.06363 -9.84748 -9.79661 -9.52851 -9.43599 -9.06171 -8.20959 -8.08787 -6.18370 -3.90686 3.47710 3.50797 3.66030 4.61500 5.38025 5.48808 5.54210 5.56838 6.01168 6.03935 6.08339 6.18888 6.31208 6.35652 6.38016 6.46343 6.57695 6.66577 6.68826 6.74649 6.79803 7.05195 7.11041 7.22642 7.32323 7.38377 7.57863 7.79871 8.43140 8.59014 9.03889 9.80604 11.17260 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.048725 B = 0.014910 C = 0.014229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.511661 B = 1877.473104 C = 1967.373706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.058 0.942 4 C -0.109 4.109 5 C -0.121 4.121 6 C 0.041 3.959 7 H 0.014 0.986 8 C -0.591 4.591 9 H 0.065 0.935 10 C 0.014 3.986 11 N -0.920 5.920 12 Si 1.064 2.936 13 H -0.290 1.290 14 H -0.287 1.287 15 H -0.290 1.290 16 C -0.055 4.055 17 C -0.114 4.114 18 C -0.132 4.132 19 H 0.046 0.954 20 H 0.040 0.960 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.272 0.728 27 H 0.053 0.947 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 4.911 0.696 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.159 4.159 6 C 0.022 3.978 7 H 0.032 0.968 8 C -0.629 4.629 9 H 0.083 0.917 10 C -0.189 4.189 11 N -0.557 5.557 12 Si 0.894 3.106 13 H -0.217 1.217 14 H -0.213 1.213 15 H -0.216 1.216 16 C -0.055 4.055 17 C -0.171 4.171 18 C -0.189 4.189 19 H 0.065 0.935 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.316 3.424 0.478 7.200 hybrid contribution -0.636 1.530 0.213 1.671 sum -6.952 4.954 0.691 8.565 Atomic orbital electron populations 1.21855 0.96404 1.01533 0.99880 1.22017 0.94254 0.98106 0.96301 0.92351 1.22423 0.98277 0.98441 0.95507 1.22530 0.93922 0.98916 1.00534 1.19443 0.91788 0.95600 0.90946 0.96777 1.22417 1.04310 0.90984 1.45211 0.91721 1.25709 0.93224 1.05765 0.94221 1.70730 1.25508 1.17202 1.42288 0.83607 0.75146 0.75354 0.76502 1.21739 1.21269 1.21630 1.21108 0.97199 0.94132 0.93061 1.21856 0.96038 0.98246 1.00913 1.21866 0.99508 0.98632 0.98893 0.93534 0.94113 0.92277 0.91996 0.94017 0.95342 0.91166 0.91641 0.92809 0.95759 0.92322 0.93770 0.94337 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.99 37.16 0.30 -1.92 16 2 C -0.09 -1.64 2.91 -88.96 -0.26 -1.90 16 3 H 0.06 1.04 7.84 -51.92 -0.41 0.63 16 4 C -0.11 -2.19 6.33 -24.73 -0.16 -2.35 16 5 C -0.12 -2.86 5.22 -25.07 -0.13 -2.99 16 6 C 0.04 1.01 2.15 -90.65 -0.19 0.82 16 7 H 0.01 0.39 7.50 -51.93 -0.39 0.00 16 8 C -0.59 -16.13 7.62 -34.44 -0.26 -16.39 16 9 H 0.06 1.73 4.66 -52.48 -0.24 1.48 16 10 C 0.01 0.40 5.08 -17.82 -0.09 0.31 16 11 N -0.92 -27.77 12.95 55.43 0.72 -27.05 16 12 Si 1.06 25.40 29.90 -169.99 -5.08 20.32 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.05 -1.13 0.86 -153.39 -0.13 -1.27 16 17 C -0.11 -2.28 5.68 37.16 0.21 -2.07 16 18 C -0.13 -2.44 8.16 37.16 0.30 -2.14 16 19 H 0.05 0.69 7.69 -51.93 -0.40 0.29 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 22 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.86 6.41 -51.93 -0.33 1.53 16 26 H 0.27 8.17 6.03 -40.82 -0.25 7.92 16 27 H 0.05 1.14 7.11 -51.93 -0.37 0.77 16 28 H 0.02 0.42 6.84 -51.93 -0.36 0.06 16 29 H 0.06 1.24 6.47 -51.93 -0.34 0.90 16 30 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 240.16 15.07 3.62 3.62 Total: -1.00 -28.82 240.16 -6.33 -35.15 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.17 Total: -2.13 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -0.42 Total: -29.90 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.72 Total: -27.05 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.82 -6.33 -35.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111513.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.801 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds