Wall clock time and date at job start Mon Mar 30 2020 02:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 110.53397 * 2 1 4 4 C 1.54893 * 110.48661 * 237.39107 * 2 1 3 5 5 C 1.54892 * 102.74606 * 203.37674 * 4 2 1 6 6 C 1.54264 * 104.19560 * 37.93738 * 5 4 2 7 7 H 1.09004 * 110.07745 * 217.08327 * 6 5 4 8 8 C 1.50703 * 110.02971 * 95.67576 * 6 5 4 9 9 H 1.08006 * 120.00159 * 242.83078 * 8 6 5 10 10 C 1.37877 * 120.00120 * 62.83448 * 8 6 5 11 11 N 1.31514 * 120.00089 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99938 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.53874 * 106.60177 * 336.39251 * 6 5 4 17 17 C 1.53004 * 110.03551 * 119.28308 * 16 6 5 18 18 C 1.53004 * 110.03117 * 240.66656 * 16 6 5 19 19 H 1.08996 * 109.47387 * 297.38644 * 1 2 3 20 20 H 1.09002 * 109.47452 * 57.38726 * 1 2 3 21 21 H 1.08998 * 109.46936 * 177.38736 * 1 2 3 22 22 H 1.08998 * 110.74849 * 321.68714 * 4 2 1 23 23 H 1.08999 * 110.75571 * 84.87591 * 4 2 1 24 24 H 1.08994 * 110.48526 * 279.26493 * 5 4 2 25 25 H 1.08999 * 110.48464 * 156.61454 * 5 4 2 26 26 H 0.96998 * 119.99255 * 0.02562 * 11 10 8 27 27 H 1.09004 * 109.46937 * 59.99787 * 17 16 6 28 28 H 1.08994 * 109.47164 * 179.97438 * 17 16 6 29 29 H 1.09000 * 109.47092 * 300.00061 * 17 16 6 30 30 H 1.08993 * 109.47176 * 59.99599 * 18 16 6 31 31 H 1.09004 * 109.46831 * 180.02562 * 18 16 6 32 32 H 1.09004 * 109.47219 * 299.99493 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 -1.2223 5 6 3.4908 -1.1978 -0.7600 6 6 3.3166 -1.5403 0.7340 7 1 4.1927 -1.2175 1.2965 8 6 3.1130 -3.0239 0.9031 9 1 2.1874 -3.3985 1.3147 10 6 4.1084 -3.9031 0.5325 11 7 5.2353 -3.4470 0.0310 12 14 3.8556 -5.7420 0.7415 13 1 4.3318 -6.1576 2.0854 14 1 4.6225 -6.4689 -0.3020 15 1 2.4117 -6.0617 0.6074 16 6 2.0699 -0.7788 1.2172 17 6 1.0139 -1.7661 1.7181 18 6 2.4505 0.1933 2.3358 19 1 -0.3634 0.4727 0.9124 20 1 -0.3634 0.5539 -0.8656 21 1 -0.3633 -1.0266 -0.0468 22 1 1.4581 -1.6600 -1.4222 23 1 2.1220 -0.1389 -2.1010 24 1 4.1897 -0.3706 -0.8827 25 1 3.8316 -2.0721 -1.3146 26 1 5.3663 -2.4921 -0.0778 27 1 1.4225 -2.3463 2.5456 28 1 0.1358 -1.2174 2.0583 29 1 0.7315 -2.4382 0.9078 30 1 3.1843 0.9075 1.9625 31 1 1.5613 0.7271 2.6713 32 1 2.8767 -0.3626 3.1709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039111513.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:27 Heat of formation + Delta-G solvation = -43.007118 kcal Electronic energy + Delta-G solvation = -11914.709309 eV Core-core repulsion = 10066.458514 eV Total energy + Delta-G solvation = -1848.250794 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.45972 -35.13983 -32.91832 -31.56901 -28.79777 -26.78779 -25.16830 -24.31202 -21.25825 -19.41213 -18.06289 -16.45853 -16.00704 -15.48251 -15.15944 -14.65081 -14.05531 -13.97315 -13.31090 -13.17218 -12.85137 -12.69184 -12.37936 -12.03695 -12.00394 -11.89333 -11.69617 -11.42246 -11.17806 -10.97340 -10.83848 -10.35711 -10.11812 -8.43767 -6.15835 1.52738 1.61264 1.77372 2.62674 3.31400 3.88727 3.92791 4.01422 4.52353 4.56126 4.60547 4.65374 4.79433 4.83055 4.87559 4.91272 5.04361 5.08990 5.12676 5.21624 5.28050 5.34805 5.43036 5.50161 5.59320 5.68192 5.83953 5.86937 6.30792 6.39665 6.83155 7.63938 8.92095 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.048725 B = 0.014910 C = 0.014229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.511661 B = 1877.473104 C = 1967.373706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.103 4.103 5 C -0.120 4.120 6 C 0.030 3.970 7 H -0.022 1.022 8 C -0.593 4.593 9 H 0.070 0.930 10 C -0.041 4.041 11 N -0.950 5.950 12 Si 1.108 2.892 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.270 1.270 16 C -0.059 4.059 17 C -0.106 4.106 18 C -0.128 4.128 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.259 0.741 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 5.719 0.968 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.140 4.140 5 C -0.158 4.158 6 C 0.012 3.988 7 H -0.004 1.004 8 C -0.631 4.631 9 H 0.088 0.912 10 C -0.238 4.238 11 N -0.589 5.589 12 Si 0.932 3.068 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.194 1.194 16 C -0.059 4.059 17 C -0.163 4.163 18 C -0.185 4.185 19 H 0.083 0.917 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.525 4.249 0.760 9.556 hybrid contribution 0.074 1.316 0.136 1.325 sum -8.451 5.565 0.896 10.159 Atomic orbital electron populations 1.21804 0.93728 1.01766 1.01877 1.21988 0.96424 0.97882 0.93718 0.91018 1.22380 0.95386 0.98834 0.97431 1.22401 0.96494 0.97471 0.99419 1.19505 0.92708 0.95104 0.91485 1.00412 1.22832 1.04092 0.92517 1.43672 0.91235 1.27065 0.92971 1.09903 0.93869 1.70842 1.26934 1.16412 1.44761 0.83037 0.76179 0.70864 0.76737 1.20546 1.21643 1.19450 1.21123 0.95323 0.94626 0.94868 1.21749 0.96993 0.97991 0.99604 1.21812 1.00889 0.98183 0.97619 0.91745 0.91970 0.92955 0.92970 0.91547 0.95153 0.94891 0.93024 0.94747 0.92286 0.93845 0.93637 0.91140 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 7.99 71.98 0.58 -3.11 16 2 C -0.08 -2.78 2.91 -9.72 -0.03 -2.81 16 3 H 0.07 2.28 7.84 -2.38 -0.02 2.26 16 4 C -0.10 -3.98 6.33 31.89 0.20 -3.78 16 5 C -0.12 -5.75 5.22 31.67 0.17 -5.59 16 6 C 0.03 1.54 2.15 -10.82 -0.02 1.51 16 7 H -0.02 -1.26 7.50 -2.39 -0.02 -1.28 16 8 C -0.59 -32.86 7.62 25.60 0.20 -32.67 16 9 H 0.07 3.72 4.66 -2.91 -0.01 3.71 16 10 C -0.04 -2.39 5.08 84.65 0.43 -1.96 16 11 N -0.95 -59.40 12.95 21.45 0.28 -59.12 16 12 Si 1.11 51.50 29.90 68.60 2.05 53.56 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 C -0.06 -2.35 0.86 -51.46 -0.04 -2.40 16 17 C -0.11 -4.06 5.68 71.98 0.41 -3.65 16 18 C -0.13 -4.48 8.16 71.98 0.59 -3.89 16 19 H 0.06 1.55 7.69 -2.39 -0.02 1.53 16 20 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.05 1.51 6.57 -2.39 -0.02 1.49 16 22 H 0.05 2.10 8.04 -2.39 -0.02 2.09 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.03 1.80 6.41 -2.39 -0.02 1.78 16 26 H 0.26 16.37 6.03 -92.71 -0.56 15.81 16 27 H 0.03 1.41 7.11 -2.39 -0.02 1.39 16 28 H 0.06 1.83 6.84 -2.39 -0.02 1.81 16 29 H 0.04 1.76 6.47 -2.39 -0.02 1.75 16 30 H 0.04 1.55 8.12 -2.39 -0.02 1.53 16 31 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -63.13 240.16 6.07 -57.06 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.28 Total: 6.84 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 2.47 Total: -58.33 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.28 Total: -59.12 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.56 kcal Total: -63.13 6.07 -57.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111513.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.048 kcal (2) G-P(sol) polarization free energy of solvation -63.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds