Wall clock time and date at job start Mon Mar 30 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 5 5 C 1.54890 * 102.91108 * 156.52843 * 4 2 1 6 6 C 1.54463 * 104.10368 * 322.30112 * 5 4 2 7 7 H 1.09001 * 109.89722 * 264.08156 * 6 5 4 8 8 C 1.50695 * 110.12114 * 142.72645 * 6 5 4 9 9 H 1.08000 * 120.00068 * 242.67580 * 8 6 5 10 10 C 1.37881 * 120.00202 * 62.67578 * 8 6 5 11 11 N 1.31513 * 119.99930 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00168 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47315 * 0.02562 * 12 10 8 14 14 H 1.48511 * 109.46892 * 120.00100 * 12 10 8 15 15 H 1.48496 * 109.47244 * 239.99925 * 12 10 8 16 16 C 1.53877 * 106.68421 * 23.34437 * 6 5 4 17 17 C 1.52996 * 110.03079 * 240.87396 * 16 6 5 18 18 C 1.52998 * 110.03089 * 119.44265 * 16 6 5 19 19 H 1.09004 * 109.46842 * 298.84055 * 1 2 3 20 20 H 1.08994 * 109.47201 * 58.83876 * 1 2 3 21 21 H 1.08998 * 109.47128 * 178.84402 * 1 2 3 22 22 H 1.09002 * 110.75856 * 274.93753 * 4 2 1 23 23 H 1.09006 * 110.75640 * 38.12739 * 4 2 1 24 24 H 1.09003 * 110.48855 * 80.83451 * 5 4 2 25 25 H 1.09003 * 110.48748 * 203.47148 * 5 4 2 26 26 H 0.97001 * 120.00481 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.47109 * 178.62096 * 17 16 6 28 28 H 1.08997 * 109.47287 * 298.61705 * 17 16 6 29 29 H 1.08998 * 109.47412 * 58.61954 * 17 16 6 30 30 H 1.09002 * 109.47212 * 301.37403 * 18 16 6 31 31 H 1.08996 * 109.47465 * 61.37772 * 18 16 6 32 32 H 1.09000 * 109.46959 * 181.38062 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 1.2222 5 6 3.4905 -1.2020 0.7629 6 6 3.3165 -1.5405 -0.7341 7 1 3.1696 -2.6135 -0.8571 8 6 4.5280 -1.0932 -1.5108 9 1 4.4297 -0.3390 -2.2776 10 6 5.7619 -1.6469 -1.2427 11 7 5.8816 -2.5657 -0.3094 12 14 7.2634 -1.0931 -2.2060 13 1 6.8644 -0.0570 -3.1922 14 1 8.2691 -0.5257 -1.2721 15 1 7.8507 -2.2558 -2.9191 16 6 2.0699 -0.7788 -1.2173 17 6 1.0139 -1.7662 -1.7181 18 6 2.4507 0.1940 -2.3351 19 1 -0.3633 0.4957 0.9002 20 1 -0.3633 0.5317 -0.8793 21 1 -0.3633 -1.0274 -0.0207 22 1 2.1251 -0.1381 2.1002 23 1 1.4562 -1.6583 1.4243 24 1 4.1917 -0.3767 0.8870 25 1 3.8278 -2.0771 1.3184 26 1 6.7496 -2.9556 -0.1209 27 1 0.1261 -1.2189 -2.0350 28 1 1.4138 -2.3292 -2.5613 29 1 0.7493 -2.4537 -0.9148 30 1 3.2023 0.8930 -1.9681 31 1 2.8547 -0.3635 -3.1800 32 1 1.5662 0.7458 -2.6534 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039111514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:28 Heat of formation + Delta-G solvation = -40.408898 kcal Electronic energy + Delta-G solvation = -11820.403179 eV Core-core repulsion = 9972.265052 eV Total energy + Delta-G solvation = -1848.138127 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23441 -34.84197 -32.85089 -31.82324 -28.32128 -27.59688 -24.76268 -24.20538 -21.18960 -18.99721 -17.80339 -16.59469 -16.16362 -15.49077 -14.86797 -14.46660 -14.04880 -13.67214 -13.41408 -13.30115 -12.96858 -12.67224 -12.37651 -12.32108 -12.15660 -11.72276 -11.37588 -11.28425 -11.06989 -10.86901 -10.60638 -10.43996 -10.38262 -8.05361 -6.11472 1.38574 1.40869 1.51388 2.46332 3.26014 3.99745 4.04517 4.15449 4.63216 4.65209 4.73915 4.76468 4.89239 4.96692 4.98875 5.06425 5.14452 5.17846 5.25994 5.31573 5.37086 5.46252 5.57105 5.62955 5.76407 5.79320 5.88597 6.01488 6.10930 6.51958 7.01812 7.55623 9.04553 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.055989 B = 0.014192 C = 0.012818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.975991 B = 1972.441000 C = 2183.841376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.062 0.938 4 C -0.117 4.117 5 C -0.089 4.089 6 C 0.046 3.954 7 H -0.012 1.012 8 C -0.525 4.525 9 H 0.077 0.923 10 C 0.003 3.997 11 N -0.927 5.927 12 Si 0.945 3.055 13 H -0.263 1.263 14 H -0.286 1.286 15 H -0.285 1.285 16 C -0.064 4.064 17 C -0.125 4.125 18 C -0.112 4.112 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.022 0.978 26 H 0.254 0.746 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 4.863 -0.594 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.127 4.127 6 C 0.028 3.972 7 H 0.006 0.994 8 C -0.563 4.563 9 H 0.095 0.905 10 C -0.194 4.194 11 N -0.568 5.568 12 Si 0.772 3.228 13 H -0.187 1.187 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.064 4.064 17 C -0.182 4.182 18 C -0.169 4.169 19 H 0.078 0.922 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.930 4.758 -0.531 10.132 hybrid contribution 1.521 -0.247 -0.248 1.560 sum -7.409 4.511 -0.779 8.709 Atomic orbital electron populations 1.21837 0.93593 1.02087 1.01740 1.21948 0.96165 0.98005 0.93884 0.91937 1.22586 0.96127 0.99250 0.97449 1.22107 0.94761 0.97621 0.98260 1.19364 0.92447 0.93238 0.92164 0.99379 1.22187 0.93113 1.21728 1.19264 0.90505 1.25815 1.01816 0.95442 0.96297 1.70147 1.24149 1.29057 1.33473 0.85695 0.80083 0.78175 0.78882 1.18694 1.21185 1.21165 1.21198 0.94877 0.95358 0.94998 1.21862 0.98255 0.98404 0.99678 1.21728 0.99333 0.98128 0.97695 0.92183 0.91989 0.92178 0.91914 0.92090 0.95598 0.95910 0.93669 0.90911 0.94745 0.93509 0.93976 0.94201 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.01 71.98 0.58 -2.97 16 2 C -0.08 -2.80 2.91 -9.72 -0.03 -2.83 16 3 H 0.06 2.17 7.85 -2.38 -0.02 2.15 16 4 C -0.12 -4.38 6.32 31.88 0.20 -4.18 16 5 C -0.09 -4.37 5.46 31.74 0.17 -4.20 16 6 C 0.05 2.35 2.47 -10.75 -0.03 2.33 16 7 H -0.01 -0.69 7.67 -2.39 -0.02 -0.71 16 8 C -0.52 -29.01 7.50 25.60 0.19 -28.82 16 9 H 0.08 4.08 4.66 -2.91 -0.01 4.06 16 10 C 0.00 0.20 5.33 84.66 0.45 0.65 16 11 N -0.93 -56.11 12.43 21.45 0.27 -55.84 16 12 Si 0.94 44.89 29.54 68.60 2.03 46.91 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 15 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 16 C -0.06 -2.55 0.86 -51.46 -0.04 -2.59 16 17 C -0.12 -4.32 6.96 71.98 0.50 -3.82 16 18 C -0.11 -4.27 6.85 71.98 0.49 -3.78 16 19 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 20 H 0.06 1.46 7.86 -2.39 -0.02 1.44 16 21 H 0.06 1.54 6.36 -2.39 -0.02 1.52 16 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 2.17 8.06 -2.38 -0.02 2.15 16 24 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 25 H 0.02 1.20 7.98 -2.39 -0.02 1.18 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.07 2.04 6.81 -2.39 -0.02 2.03 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.59 7.56 -2.39 -0.02 1.57 16 30 H 0.04 1.71 7.00 -2.39 -0.02 1.69 16 31 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -61.34 243.71 5.84 -55.49 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.06 Total: 3.64 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 2.49 Total: -50.20 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.27 Total: -55.84 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -61.34 5.84 -55.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039111514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.083 kcal (2) G-P(sol) polarization free energy of solvation -61.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds