Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.26984 * 125.11824 * 2 1 4 4 N 1.39337 * 114.48900 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.65281 * 180.02562 * 4 3 2 6 6 C 1.47236 * 108.69680 * 0.02562 * 4 3 2 7 7 C 1.52997 * 110.80867 * 118.50925 * 6 4 3 8 8 C 1.50700 * 110.66169 * 241.55720 * 6 4 3 9 9 H 1.08002 * 119.99838 * 355.14857 * 8 6 4 10 10 C 1.37879 * 120.00328 * 175.14570 * 8 6 4 11 11 N 1.31516 * 119.99502 * 352.65780 * 10 8 6 12 12 Si 1.86793 * 120.00319 * 172.65938 * 10 8 6 13 13 H 1.48500 * 109.47161 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47499 * 240.00122 * 12 10 8 15 15 H 1.48502 * 109.47170 * 120.00230 * 12 10 8 16 16 C 1.51209 * 125.12329 * 180.02562 * 2 1 3 17 17 H 1.09007 * 109.46569 * 269.97160 * 1 2 3 18 18 H 1.08999 * 109.47416 * 29.97178 * 1 2 3 19 19 H 1.09003 * 109.47113 * 149.97728 * 1 2 3 20 20 H 1.09004 * 109.46803 * 274.98303 * 5 4 3 21 21 H 1.08994 * 109.46707 * 34.98042 * 5 4 3 22 22 H 1.08995 * 109.46956 * 154.98223 * 5 4 3 23 23 H 1.08999 * 109.47604 * 178.39845 * 7 6 4 24 24 H 1.09004 * 109.46788 * 298.40058 * 7 6 4 25 25 H 1.09002 * 109.47319 * 58.39381 * 7 6 4 26 26 H 0.97002 * 120.00169 * 3.81851 * 11 10 8 27 27 H 1.09001 * 110.56135 * 61.39432 * 16 2 1 28 28 H 1.09004 * 110.55725 * 298.55525 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0387 0.0000 4 7 3.6069 0.7817 -0.0006 5 6 4.6658 1.7942 -0.0002 6 6 3.8136 -0.6761 -0.0016 7 6 4.5653 -1.1176 -1.2589 8 6 4.5535 -1.1092 1.2377 9 1 4.9202 -0.3694 1.9339 10 6 4.7622 -2.4499 1.4830 11 7 4.1942 -3.3548 0.7161 12 14 5.8516 -2.9808 2.9044 13 1 6.3666 -1.7794 3.6090 14 1 6.9921 -3.7766 2.3836 15 1 5.0618 -3.8088 3.8510 16 6 2.3769 -1.2368 -0.0006 17 1 -0.3633 -0.0005 1.0278 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3633 -0.8898 -0.5142 20 1 4.8664 2.1105 -1.0238 21 1 4.3466 2.6534 0.5897 22 1 5.5720 1.3719 0.4339 23 1 4.7313 -2.1943 -1.2239 24 1 3.9751 -0.8694 -2.1411 25 1 5.5252 -0.6034 -1.3077 26 1 3.6737 -3.0796 -0.0549 27 1 2.1975 -1.8306 -0.8968 28 1 2.1981 -1.8309 0.8957 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039134143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = 48.336463 kcal Electronic energy + Delta-G solvation = -11463.543619 eV Core-core repulsion = 9515.713436 eV Total energy + Delta-G solvation = -1947.830183 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.87738 -33.99052 -32.38201 -29.72577 -28.45769 -25.78938 -25.02970 -23.64499 -19.66755 -18.34550 -16.73839 -14.84603 -14.23890 -13.94479 -13.46954 -12.94990 -12.84061 -12.32084 -12.16714 -11.76015 -11.66359 -11.34522 -10.86678 -10.74145 -10.58203 -10.17703 -10.16940 -9.99873 -8.96637 -8.69611 -8.35268 -6.55594 -6.28722 -4.15348 3.26610 3.40389 3.42735 3.57246 3.93028 4.47760 5.25561 5.46348 5.60013 6.01734 6.04540 6.15112 6.17053 6.24532 6.35845 6.46617 6.53164 6.60490 6.81487 6.86833 7.17473 7.42962 7.61182 8.07483 8.28293 8.58608 8.78809 9.26153 9.57040 10.95079 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.043219 B = 0.016159 C = 0.014198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.707273 B = 1732.373218 C = 1971.614898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.011 3.989 3 N -0.245 5.245 4 N -0.540 5.540 5 C 0.158 3.842 6 C 0.260 3.740 7 C -0.143 4.143 8 C -0.594 4.594 9 H 0.053 0.947 10 C 0.025 3.975 11 N -0.912 5.912 12 Si 1.074 2.926 13 H -0.290 1.290 14 H -0.286 1.286 15 H -0.287 1.287 16 C -0.111 4.111 17 H 0.066 0.934 18 H 0.062 0.938 19 H 0.067 0.933 20 H 0.025 0.975 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.021 0.979 25 H 0.040 0.960 26 H 0.277 0.723 27 H 0.059 0.941 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 4.052 -1.361 4.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.184 4.184 3 N -0.052 5.052 4 N -0.357 5.357 5 C 0.015 3.985 6 C 0.175 3.825 7 C -0.203 4.203 8 C -0.633 4.633 9 H 0.072 0.928 10 C -0.180 4.180 11 N -0.549 5.549 12 Si 0.902 3.098 13 H -0.216 1.216 14 H -0.212 1.212 15 H -0.213 1.213 16 C -0.152 4.152 17 H 0.085 0.915 18 H 0.081 0.919 19 H 0.086 0.914 20 H 0.043 0.957 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.587 3.840 -0.558 4.192 hybrid contribution -0.316 0.488 -0.814 1.000 sum -1.904 4.327 -1.372 4.923 Atomic orbital electron populations 1.20040 0.87968 1.02005 1.01983 1.24564 0.95771 0.92646 1.05465 1.73128 0.93182 1.29062 1.09808 1.50728 0.97788 1.04859 1.82296 1.20835 0.88972 0.90044 0.98671 1.19194 0.91681 0.77335 0.94303 1.22157 0.99236 1.02243 0.96653 1.22136 1.39359 0.94624 1.07183 0.92840 1.25754 0.97325 0.92585 1.02337 1.70770 1.31016 1.36541 1.16574 0.83470 0.76016 0.75257 0.75021 1.21640 1.21235 1.21315 1.22382 0.94811 0.96203 1.01809 0.91491 0.91878 0.91360 0.95698 0.93384 0.91187 0.91267 0.95989 0.94101 0.91022 0.92280 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.48 36.00 0.38 -0.60 15 2 C 0.01 0.23 7.43 -79.08 -0.59 -0.36 15 3 N -0.24 -5.74 11.97 34.80 0.42 -5.32 15 4 N -0.54 -13.08 3.80 -107.81 -0.41 -13.49 15 5 C 0.16 3.20 11.14 59.85 0.67 3.87 15 6 C 0.26 6.66 0.84 -131.94 -0.11 6.55 15 7 C -0.14 -3.47 8.28 37.16 0.31 -3.17 15 8 C -0.59 -16.56 7.82 -34.44 -0.27 -16.83 15 9 H 0.05 1.54 7.78 -52.49 -0.41 1.13 15 10 C 0.02 0.69 4.97 -17.82 -0.09 0.60 15 11 N -0.91 -26.13 12.49 55.43 0.69 -25.44 15 12 Si 1.07 24.89 29.91 -169.99 -5.08 19.81 15 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 16 C -0.11 -2.70 4.51 -27.00 -0.12 -2.82 15 17 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 18 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 20 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 22 H 0.07 1.41 7.83 -51.93 -0.41 1.00 15 23 H 0.07 1.76 5.92 -51.93 -0.31 1.45 15 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 25 H 0.04 0.95 8.05 -51.93 -0.42 0.53 15 26 H 0.28 7.76 4.33 -40.82 -0.18 7.58 15 27 H 0.06 1.37 7.49 -51.93 -0.39 0.98 15 28 H 0.09 2.28 7.08 -51.93 -0.37 1.91 15 LS Contribution 232.30 15.07 3.50 3.50 Total: -1.00 -30.76 232.30 -4.52 -35.28 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.81 Total: -1.59 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 0.17 Total: -12.75 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.70 Total: -44.25 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.76 -4.52 -35.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039134143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.615 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds