Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.26984 * 125.11824 * 2 1 4 4 N 1.39337 * 114.48900 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.65281 * 180.02562 * 4 3 2 6 6 C 1.47236 * 108.69680 * 0.02562 * 4 3 2 7 7 C 1.52997 * 110.80867 * 118.50925 * 6 4 3 8 8 C 1.50700 * 110.66169 * 241.55720 * 6 4 3 9 9 H 1.08002 * 119.99838 * 355.14857 * 8 6 4 10 10 C 1.37879 * 120.00328 * 175.14570 * 8 6 4 11 11 N 1.31516 * 119.99502 * 352.65780 * 10 8 6 12 12 Si 1.86793 * 120.00319 * 172.65938 * 10 8 6 13 13 H 1.48500 * 109.47161 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47499 * 240.00122 * 12 10 8 15 15 H 1.48502 * 109.47170 * 120.00230 * 12 10 8 16 16 C 1.51209 * 125.12329 * 180.02562 * 2 1 3 17 17 H 1.09007 * 109.46569 * 269.97160 * 1 2 3 18 18 H 1.08999 * 109.47416 * 29.97178 * 1 2 3 19 19 H 1.09003 * 109.47113 * 149.97728 * 1 2 3 20 20 H 1.09004 * 109.46803 * 274.98303 * 5 4 3 21 21 H 1.08994 * 109.46707 * 34.98042 * 5 4 3 22 22 H 1.08995 * 109.46956 * 154.98223 * 5 4 3 23 23 H 1.08999 * 109.47604 * 178.39845 * 7 6 4 24 24 H 1.09004 * 109.46788 * 298.40058 * 7 6 4 25 25 H 1.09002 * 109.47319 * 58.39381 * 7 6 4 26 26 H 0.97002 * 120.00169 * 3.81851 * 11 10 8 27 27 H 1.09001 * 110.56135 * 61.39432 * 16 2 1 28 28 H 1.09004 * 110.55725 * 298.55525 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0387 0.0000 4 7 3.6069 0.7817 -0.0006 5 6 4.6658 1.7942 -0.0002 6 6 3.8136 -0.6761 -0.0016 7 6 4.5653 -1.1176 -1.2589 8 6 4.5535 -1.1092 1.2377 9 1 4.9202 -0.3694 1.9339 10 6 4.7622 -2.4499 1.4830 11 7 4.1942 -3.3548 0.7161 12 14 5.8516 -2.9808 2.9044 13 1 6.3666 -1.7794 3.6090 14 1 6.9921 -3.7766 2.3836 15 1 5.0618 -3.8088 3.8510 16 6 2.3769 -1.2368 -0.0006 17 1 -0.3633 -0.0005 1.0278 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3633 -0.8898 -0.5142 20 1 4.8664 2.1105 -1.0238 21 1 4.3466 2.6534 0.5897 22 1 5.5720 1.3719 0.4339 23 1 4.7313 -2.1943 -1.2239 24 1 3.9751 -0.8694 -2.1411 25 1 5.5252 -0.6034 -1.3077 26 1 3.6737 -3.0796 -0.0549 27 1 2.1975 -1.8306 -0.8968 28 1 2.1981 -1.8309 0.8957 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039134143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = 28.720254 kcal Electronic energy + Delta-G solvation = -11464.394241 eV Core-core repulsion = 9515.713436 eV Total energy + Delta-G solvation = -1948.680805 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.70517 -35.95297 -34.10293 -31.69502 -29.91372 -27.69396 -27.09135 -25.36522 -21.60238 -20.18085 -18.66095 -16.64562 -16.10602 -15.79337 -15.22515 -14.71416 -14.52795 -13.98758 -13.80117 -13.51220 -13.24280 -13.18237 -12.67356 -12.58010 -12.42861 -11.98655 -11.91782 -11.89732 -10.87552 -10.63458 -10.42010 -8.64199 -8.19112 -6.34224 1.51568 1.55628 1.59649 1.76731 2.23087 2.55728 3.15506 3.79298 3.96048 4.25864 4.42175 4.58537 4.63632 4.66649 4.79372 4.81760 4.85681 4.94151 4.95128 5.07461 5.27524 5.50157 5.87241 6.03588 6.12528 6.62109 6.76919 7.41627 7.52182 8.78763 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.043219 B = 0.016159 C = 0.014198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.707273 B = 1732.373218 C = 1971.614898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.019 3.981 3 N -0.264 5.264 4 N -0.559 5.559 5 C 0.154 3.846 6 C 0.245 3.755 7 C -0.131 4.131 8 C -0.607 4.607 9 H 0.035 0.965 10 C -0.015 4.015 11 N -0.929 5.929 12 Si 1.115 2.885 13 H -0.282 1.282 14 H -0.276 1.276 15 H -0.280 1.280 16 C -0.110 4.110 17 H 0.082 0.918 18 H 0.083 0.917 19 H 0.089 0.911 20 H 0.044 0.956 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.272 0.728 27 H 0.064 0.936 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 4.427 -1.336 5.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.177 4.177 3 N -0.070 5.070 4 N -0.376 5.376 5 C 0.012 3.988 6 C 0.159 3.841 7 C -0.191 4.191 8 C -0.646 4.646 9 H 0.053 0.947 10 C -0.215 4.215 11 N -0.567 5.567 12 Si 0.938 3.062 13 H -0.208 1.208 14 H -0.202 1.202 15 H -0.206 1.206 16 C -0.151 4.151 17 H 0.100 0.900 18 H 0.101 0.899 19 H 0.108 0.892 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.150 4.242 -0.547 4.788 hybrid contribution -0.183 0.384 -0.837 0.939 sum -2.334 4.626 -1.384 5.363 Atomic orbital electron populations 1.20241 0.83830 1.04097 1.03577 1.25367 0.98133 0.90800 1.03377 1.73160 0.92922 1.29494 1.11427 1.50931 0.98736 1.04700 1.83206 1.20991 0.87989 0.89732 1.00082 1.19208 0.92240 0.78844 0.93799 1.21992 0.99411 1.00971 0.96688 1.22317 1.39828 0.94541 1.07922 0.94659 1.26949 0.97788 0.92800 1.03996 1.70848 1.31902 1.36864 1.17083 0.82926 0.74970 0.75424 0.72839 1.20761 1.20167 1.20615 1.22241 0.95039 0.97060 1.00724 0.89986 0.89850 0.89227 0.93797 0.91927 0.91860 0.92960 0.94821 0.93894 0.91554 0.91762 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.48 71.23 0.75 -0.96 15 2 C 0.02 0.78 7.43 46.84 0.35 1.13 15 3 N -0.26 -11.98 11.97 -41.37 -0.50 -12.48 15 4 N -0.56 -26.61 3.80 -494.99 -1.88 -28.49 15 5 C 0.15 6.09 11.14 127.77 1.42 7.52 15 6 C 0.25 12.52 0.84 3.13 0.00 12.52 15 7 C -0.13 -6.32 8.28 71.98 0.60 -5.72 15 8 C -0.61 -34.05 7.82 25.60 0.20 -33.85 15 9 H 0.04 2.05 7.78 -2.91 -0.02 2.03 15 10 C -0.01 -0.81 4.97 84.65 0.42 -0.39 15 11 N -0.93 -53.39 12.49 21.45 0.27 -53.13 15 12 Si 1.12 49.80 29.91 68.60 2.05 51.85 15 13 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 14 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 15 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 16 C -0.11 -5.28 4.51 30.42 0.14 -5.15 15 17 H 0.08 2.17 8.14 -2.38 -0.02 2.15 15 18 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 19 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.04 1.55 8.14 -2.38 -0.02 1.53 15 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.06 2.53 7.83 -2.39 -0.02 2.51 15 23 H 0.05 2.66 5.92 -2.39 -0.01 2.65 15 24 H 0.03 1.49 8.14 -2.38 -0.02 1.47 15 25 H 0.04 1.98 8.05 -2.39 -0.02 1.96 15 26 H 0.27 15.40 4.33 -92.71 -0.40 14.99 15 27 H 0.06 2.96 7.49 -2.39 -0.02 2.94 15 28 H 0.06 3.20 7.08 -2.39 -0.02 3.18 15 Total: -1.00 -64.48 232.30 5.31 -59.17 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.49 Total: 7.97 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.87 Total: -24.90 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -2.11 Total: -94.09 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -64.48 5.31 -59.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039134143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.890 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds