Wall clock time and date at job start Mon Mar 30 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48503 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47007 * 300.00158 * 3 2 1 6 6 H 1.48499 * 109.46946 * 60.00214 * 3 2 1 7 7 C 1.37878 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00347 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99736 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47169 * 179.97438 * 9 7 2 11 11 N 1.40103 * 126.02107 * 270.00494 * 10 9 7 12 12 H 0.97003 * 126.00865 * 359.95972 * 11 10 9 13 13 C 1.34778 * 107.97701 * 179.97438 * 11 10 9 14 14 O 1.21918 * 125.98841 * 179.97438 * 13 11 10 15 15 C 1.40240 * 108.02628 * 359.97438 * 13 11 10 16 16 C 1.36565 * 108.03492 * 0.02562 * 15 13 11 17 17 N 1.37124 * 125.99730 * 179.74064 * 16 15 13 18 18 H 0.96992 * 120.00152 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47103 * 60.00150 * 9 7 2 20 20 H 1.08998 * 109.47715 * 300.00381 * 9 7 2 21 21 H 1.07995 * 125.98466 * 180.02562 * 15 13 11 22 22 H 0.96990 * 120.00140 * 0.02562 * 17 16 15 23 23 H 0.97005 * 119.99231 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 7 2.7377 -4.2384 -1.1356 12 1 2.5422 -4.0108 -2.0581 13 6 3.5712 -5.2122 -0.7192 14 8 4.2117 -5.9621 -1.4361 15 6 3.5726 -5.2120 0.6832 16 6 2.7286 -4.2255 1.1067 17 7 2.4511 -3.9073 2.4113 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 4.1416 -5.8757 1.3173 22 1 2.8714 -4.4028 3.1313 23 1 1.8344 -3.1865 2.6140 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040907102.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:18 Heat of formation + Delta-G solvation = 32.418227 kcal Electronic energy + Delta-G solvation = -10825.797754 eV Core-core repulsion = 8676.018299 eV Total energy + Delta-G solvation = -2149.779455 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.59768 -36.52946 -34.21456 -33.51169 -30.79771 -29.01200 -26.54148 -23.01244 -20.70499 -20.38332 -17.32274 -16.79771 -16.33988 -15.48299 -14.83994 -14.75336 -13.97794 -13.23529 -12.83913 -12.54646 -11.97061 -11.74615 -11.18884 -11.00930 -10.45990 -10.38176 -9.62955 -9.04704 -8.83844 -7.66346 -6.95453 -6.41320 -4.55298 2.49498 2.74664 3.08419 3.18037 3.23946 4.12859 4.18774 4.24554 4.83820 4.93017 6.08210 6.15181 6.65206 6.72818 6.77536 7.03212 7.50429 7.60385 7.65469 7.76832 8.23296 8.37882 8.58792 9.14434 9.27778 10.61332 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.055948 B = 0.011578 C = 0.010916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.347268 B = 2417.814712 C = 2564.333159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.381 5.381 11 N -0.518 5.518 12 H 0.427 0.573 13 C 0.542 3.458 14 O -0.599 6.599 15 C -0.471 4.471 16 C 0.471 3.529 17 N -0.838 5.838 18 H 0.269 0.731 19 H 0.048 0.952 20 H 0.055 0.945 21 H 0.143 0.857 22 H 0.416 0.584 23 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -2.089 4.742 5.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.590 4.590 8 H 0.086 0.914 9 C 0.142 3.858 10 N -0.180 5.180 11 N -0.267 5.267 12 H 0.272 0.728 13 C 0.343 3.657 14 O -0.484 6.484 15 C -0.506 4.506 16 C 0.244 3.756 17 N -0.385 5.385 18 H 0.079 0.921 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.161 0.839 22 H 0.247 0.753 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.470 -2.187 4.175 4.737 hybrid contribution 0.087 1.394 -0.002 1.397 sum 0.557 -0.793 4.173 4.284 Atomic orbital electron populations 1.69913 1.06089 1.27910 1.48723 1.24964 0.94962 0.99635 0.94099 0.86294 0.80121 0.82330 0.77945 1.19465 1.20598 1.20589 1.21543 0.94113 0.89856 1.53515 0.91356 1.19734 0.85758 0.80428 0.99910 1.47042 1.42941 1.32157 0.95907 1.45878 1.45731 1.33619 1.01507 0.72818 1.16361 0.79625 0.80054 0.89684 1.90801 1.48852 1.45245 1.63512 1.20730 1.20766 1.13859 0.95237 1.17217 0.88814 0.88770 0.80804 1.41272 1.53196 1.41811 1.02199 0.92101 0.93379 0.92711 0.83918 0.75311 0.76322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.01 13.29 55.43 0.74 -22.27 14 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 14 3 Si 0.91 19.68 29.54 -169.99 -5.02 14.66 14 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 14 7 C -0.55 -13.63 9.39 -34.44 -0.32 -13.96 14 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 14 9 C 0.26 5.74 6.01 -5.19 -0.03 5.71 14 10 N -0.38 -7.82 3.66 -61.61 -0.23 -8.05 14 11 N -0.52 -10.69 7.22 28.82 0.21 -10.48 14 12 H 0.43 7.93 8.96 -182.59 -1.64 6.29 14 13 C 0.54 12.17 8.28 -15.51 -0.13 12.04 14 14 O -0.60 -15.20 18.07 4.99 0.09 -15.11 14 15 C -0.47 -9.36 10.85 -39.43 -0.43 -9.79 14 16 C 0.47 8.73 7.95 -153.54 -1.22 7.51 14 17 N -0.84 -11.68 9.00 31.12 0.28 -11.40 14 18 H 0.27 6.62 8.31 -40.82 -0.34 6.28 14 19 H 0.05 1.12 8.14 -51.93 -0.42 0.70 14 20 H 0.06 1.19 7.50 -51.93 -0.39 0.81 14 21 H 0.14 2.56 8.06 -52.49 -0.42 2.14 14 22 H 0.42 4.33 8.94 -40.82 -0.37 3.97 14 23 H 0.41 5.57 8.07 -40.82 -0.33 5.24 14 LS Contribution 215.82 15.07 3.25 3.25 Total: -1.00 -30.33 215.82 -6.02 -36.35 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.11 Total: 9.95 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.23 Total: 3.11 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 1.00 Total: -52.21 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -30.33 -6.02 -36.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040907102.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.765 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds