Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48501 * 109.47227 * 270.00301 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99888 * 3 2 1 6 6 H 1.48494 * 109.47215 * 149.99954 * 3 2 1 7 7 C 1.39943 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99873 * 162.94875 * 7 2 1 9 9 C 1.41410 * 120.00194 * 342.95434 * 7 2 1 10 10 C 1.40759 * 120.65632 * 155.87377 * 9 7 2 11 11 N 1.31472 * 120.42730 * 179.97438 * 10 9 7 12 12 C 1.32071 * 121.99745 * 0.02562 * 11 10 9 13 13 C 1.38709 * 121.30138 * 359.97186 * 12 11 10 14 14 Cl 1.73597 * 120.30465 * 179.97438 * 13 12 11 15 15 C 1.38167 * 119.39527 * 0.02828 * 13 12 11 16 16 H 0.96994 * 120.00055 * 0.02562 * 1 2 3 17 17 H 1.08001 * 119.78724 * 0.02562 * 10 9 7 18 18 H 1.08001 * 119.35479 * 179.97438 * 12 11 10 19 19 H 1.08006 * 120.90425 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0524 -1.2324 -0.2748 9 6 1.3475 -2.4099 0.3579 10 6 1.8227 -3.6548 -0.0956 11 7 1.2055 -4.7658 0.2408 12 6 0.1293 -4.7642 1.0063 13 6 -0.4049 -3.5816 1.4961 14 17 -1.8210 -3.6096 2.4999 15 6 0.1997 -2.3809 1.1770 16 1 -0.4850 0.8400 -0.0004 17 1 2.7005 -3.6977 -0.7234 18 1 -0.3442 -5.7022 1.2560 19 1 -0.1959 -1.4456 1.5447 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369737.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -10.691911 kcal Electronic energy + Delta-G solvation = -8646.051021 eV Core-core repulsion = 6766.985490 eV Total energy + Delta-G solvation = -1879.065532 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 183.015 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.25005 -37.30903 -36.04358 -32.48622 -31.75550 -27.64703 -23.92313 -23.30583 -19.43054 -17.70608 -17.13748 -16.53065 -16.01408 -14.69907 -14.62713 -13.70151 -13.43492 -13.26740 -12.84437 -12.71031 -12.46555 -12.05647 -11.70342 -11.25514 -10.22770 -10.05292 -9.56113 -8.78247 -6.55529 0.54322 0.85451 1.36347 1.40616 1.49749 1.57092 2.16540 2.61802 3.53429 4.06634 4.45957 4.67071 4.74466 5.02370 5.12800 5.52957 5.77133 5.79590 6.32058 6.60925 6.65099 7.51359 8.15972 Molecular weight = 183.01amu Principal moments of inertia in cm(-1) A = 0.052787 B = 0.014319 C = 0.011604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.306349 B = 1955.037330 C = 2412.361363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.469 4.469 8 H 0.097 0.903 9 C 0.047 3.953 10 C -0.032 4.032 11 N -0.463 5.463 12 C -0.044 4.044 13 C -0.052 4.052 14 Cl -0.084 7.084 15 C -0.155 4.155 16 H 0.296 0.704 17 H 0.149 0.851 18 H 0.152 0.848 19 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 1.740 1.954 2.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.497 4.497 8 H 0.115 0.885 9 C 0.042 3.958 10 C -0.195 4.195 11 N -0.171 5.171 12 C -0.201 4.201 13 C -0.081 4.081 14 Cl -0.056 7.056 15 C -0.181 4.181 16 H 0.107 0.893 17 H 0.166 0.834 18 H 0.170 0.830 19 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.110 1.074 1.740 2.048 hybrid contribution -0.409 1.381 0.346 1.481 sum -0.300 2.454 2.086 3.235 Atomic orbital electron populations 1.69817 1.09353 1.31616 1.32858 1.26955 0.95531 1.05136 0.90733 0.85045 0.79091 0.74951 0.79811 1.18316 1.19153 1.17746 1.19945 0.98766 0.91310 1.39727 0.88499 1.18813 0.92007 0.94908 0.90087 1.22890 1.03431 0.87830 1.05310 1.67133 1.07389 1.31783 1.10793 1.22042 0.97459 0.95967 1.04608 1.21966 0.91118 0.96520 0.98460 1.98259 1.39926 1.98961 1.68427 1.21637 0.99416 0.96075 1.01013 0.89314 0.83393 0.83026 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.75 10.93 21.83 0.24 -39.51 13 2 C 0.03 1.58 5.18 85.26 0.44 2.02 13 3 Si 0.99 34.77 29.59 68.60 2.03 36.80 13 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 13 5 H -0.27 -9.01 7.11 99.48 0.71 -8.31 13 6 H -0.25 -8.69 7.11 99.48 0.71 -7.98 13 7 C -0.47 -23.28 9.08 23.46 0.21 -23.06 13 8 H 0.10 4.47 7.90 -2.91 -0.02 4.45 13 9 C 0.05 2.42 5.59 -21.19 -0.12 2.30 13 10 C -0.03 -1.59 10.98 85.36 0.94 -0.66 13 11 N -0.46 -22.48 10.33 -193.51 -2.00 -24.48 13 12 C -0.04 -2.02 10.98 84.77 0.93 -1.09 13 13 C -0.05 -2.43 6.33 22.37 0.14 -2.29 13 14 Cl -0.08 -3.29 28.98 -2.72 -0.08 -3.37 13 15 C -0.15 -7.95 8.61 22.94 0.20 -7.75 13 16 H 0.30 12.99 8.30 -92.71 -0.77 12.22 13 17 H 0.15 6.58 8.06 -2.91 -0.02 6.55 13 18 H 0.15 6.08 8.06 -2.91 -0.02 6.05 13 19 H 0.13 6.62 6.22 -2.91 -0.02 6.60 13 Total: -1.00 -53.71 196.43 4.20 -49.51 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.26 Total: 11.57 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.74 Total: -30.52 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -1.76 Total: -63.99 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 17 Polarization: -3.29 SS G_CDS: -0.08 Total: -3.37 kcal Total: -53.71 4.20 -49.51 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369737.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.823 kcal (2) G-P(sol) polarization free energy of solvation -53.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds