Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.05489 * 2 1 4 4 C 1.54266 * 110.03324 * 238.58709 * 2 1 3 5 5 C 1.54893 * 104.19489 * 264.32380 * 4 2 1 6 6 C 1.54882 * 102.74916 * 322.05849 * 5 4 2 7 7 C 1.53875 * 110.03464 * 121.41676 * 2 1 3 8 8 C 1.53000 * 110.02996 * 359.95304 * 7 2 1 9 9 C 1.50694 * 110.03346 * 238.56936 * 7 2 1 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 7 2 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 7 2 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 H 1.09002 * 109.46784 * 298.57685 * 1 2 3 18 18 H 1.08999 * 109.47455 * 58.57889 * 1 2 3 19 19 H 1.08995 * 109.46963 * 178.58589 * 1 2 3 20 20 H 1.09004 * 109.46971 * 181.41392 * 3 2 1 21 21 H 1.08996 * 109.47633 * 301.41755 * 3 2 1 22 22 H 1.08998 * 109.47192 * 61.42278 * 3 2 1 23 23 H 1.08996 * 110.48486 * 23.00092 * 4 2 1 24 24 H 1.08997 * 110.48962 * 145.51152 * 4 2 1 25 25 H 1.09002 * 110.75571 * 80.37013 * 5 4 2 26 26 H 1.08994 * 110.75706 * 203.74036 * 5 4 2 27 27 H 1.09003 * 110.48554 * 279.26146 * 6 5 4 28 28 H 1.08998 * 110.49291 * 156.62344 * 6 5 4 29 29 H 1.09000 * 109.46934 * 299.30541 * 8 7 2 30 30 H 1.09000 * 109.47215 * 59.31183 * 8 7 2 31 31 H 1.09001 * 109.47035 * 179.30639 * 8 7 2 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 2.3281 -2.1901 -0.7192 6 6 2.8874 -1.9407 0.7034 7 6 2.0571 -0.7536 1.2337 8 6 0.8862 -1.2659 2.0747 9 6 2.9276 0.1564 2.0614 10 1 3.0958 1.1759 1.7471 11 6 3.5102 -0.3128 3.2197 12 7 3.3057 -1.5544 3.6024 13 14 4.5897 0.8150 4.2454 14 1 5.9978 0.7040 3.7870 15 1 4.1279 2.2178 4.0906 16 1 4.5017 0.4196 5.6741 17 1 -0.3633 0.4916 0.9025 18 1 -0.3634 0.5357 -0.8769 19 1 -0.3633 -1.0273 -0.0254 20 1 3.1443 1.4262 -0.0254 21 1 1.6761 1.9623 -0.8769 22 1 1.7175 1.9471 0.9024 23 1 1.3061 -0.7695 -2.0255 24 1 2.9798 -0.2986 -1.5981 25 1 1.4031 -2.7651 -0.6752 26 1 3.0675 -2.6930 -1.3423 27 1 3.9440 -1.6767 0.6570 28 1 2.7402 -2.8197 1.3308 29 1 0.2851 -0.4218 2.4129 30 1 0.2699 -1.9325 1.4715 31 1 1.2696 -1.8083 2.9390 32 1 3.7159 -1.8846 4.4170 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045809663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -17.177397 kcal Electronic energy + Delta-G solvation = -12056.579798 eV Core-core repulsion = 10209.449064 eV Total energy + Delta-G solvation = -1847.130734 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.62063 -32.69870 -31.16253 -29.34267 -27.43242 -24.15367 -24.13380 -22.33018 -19.31785 -17.44609 -15.27738 -14.85219 -14.37709 -13.78961 -13.01531 -12.33954 -12.17833 -12.02101 -11.61212 -11.38348 -11.24592 -10.77339 -10.62993 -10.40177 -10.25196 -9.72707 -9.61258 -9.53912 -9.49949 -9.05482 -8.75171 -8.29648 -8.20536 -5.85827 -3.90585 3.34727 3.41987 3.44672 4.51385 5.40036 5.68980 5.75285 5.78099 6.22255 6.28438 6.38136 6.49025 6.52450 6.67937 6.74162 6.75313 6.85889 6.88743 7.01114 7.04978 7.14912 7.30801 7.40483 7.46106 7.57861 7.73707 7.93934 8.10110 8.34208 8.64937 9.09832 9.73399 11.18377 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047480 B = 0.016777 C = 0.015474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.579091 B = 1668.565801 C = 1809.023595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.117 4.117 4 C -0.110 4.110 5 C -0.132 4.132 6 C -0.087 4.087 7 C 0.078 3.922 8 C -0.129 4.129 9 C -0.509 4.509 10 H 0.070 0.930 11 C 0.062 3.938 12 N -0.888 5.888 13 Si 0.883 3.117 14 H -0.283 1.283 15 H -0.276 1.276 16 H -0.289 1.289 17 H 0.053 0.947 18 H 0.030 0.970 19 H 0.048 0.952 20 H 0.056 0.944 21 H 0.019 0.981 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.009 0.991 31 H 0.079 0.921 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 1.199 -5.582 6.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.174 4.174 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.125 4.125 7 C 0.078 3.922 8 C -0.187 4.187 9 C -0.547 4.547 10 H 0.088 0.912 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.711 3.289 14 H -0.210 1.210 15 H -0.201 1.201 16 H -0.215 1.215 17 H 0.072 0.928 18 H 0.049 0.951 19 H 0.067 0.933 20 H 0.075 0.925 21 H 0.038 0.962 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.098 0.902 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.574 1.082 -5.421 6.098 hybrid contribution 0.650 0.536 0.658 1.069 sum -1.924 1.618 -4.763 5.386 Atomic orbital electron populations 1.21932 0.96600 1.00463 0.99744 1.21222 0.93525 0.95352 0.96224 1.21832 1.00821 0.95946 0.98799 1.22412 0.99284 0.96230 0.96820 1.22593 0.99296 0.95857 0.99237 1.22292 0.99095 0.99521 0.91605 1.18646 0.92164 0.91649 0.89729 1.21942 0.96946 0.98494 1.01301 1.21633 1.28123 0.98371 1.06562 0.91230 1.24979 0.96518 0.94866 0.97518 1.69918 1.44249 1.14705 1.23821 0.86747 0.81120 0.81301 0.79698 1.20976 1.20111 1.21521 0.92824 0.95121 0.93260 0.92508 0.96211 0.92585 0.93831 0.92673 0.93152 0.93817 0.93230 0.92686 0.95664 0.97221 0.90212 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.19 37.16 0.27 -2.18 16 2 C -0.06 -1.31 0.94 -153.39 -0.14 -1.45 16 3 C -0.12 -2.35 6.86 37.16 0.25 -2.10 16 4 C -0.11 -2.09 5.90 -25.07 -0.15 -2.24 16 5 C -0.13 -2.60 6.91 -24.74 -0.17 -2.77 16 6 C -0.09 -2.06 4.98 -25.07 -0.12 -2.18 16 7 C 0.08 1.88 0.62 -154.54 -0.10 1.79 16 8 C -0.13 -3.12 6.96 37.16 0.26 -2.86 16 9 C -0.51 -13.48 6.98 -34.44 -0.24 -13.72 16 10 H 0.07 1.81 4.66 -52.49 -0.24 1.57 16 11 C 0.06 1.68 5.18 -17.82 -0.09 1.59 16 12 N -0.89 -24.86 10.39 55.43 0.58 -24.29 16 13 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H 0.05 1.03 6.76 -51.93 -0.35 0.68 16 18 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 19 H 0.05 0.91 6.72 -51.93 -0.35 0.56 16 20 H 0.06 1.18 7.08 -51.93 -0.37 0.82 16 21 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 1.17 7.11 -51.93 -0.37 0.80 16 23 H 0.04 0.74 7.84 -51.93 -0.41 0.33 16 24 H 0.05 1.03 7.83 -51.93 -0.41 0.62 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 28 H 0.05 1.38 7.67 -51.93 -0.40 0.98 16 29 H 0.02 0.59 6.78 -51.93 -0.35 0.23 16 30 H 0.01 0.20 6.70 -51.93 -0.35 -0.15 16 31 H 0.08 2.13 5.99 -51.93 -0.31 1.82 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 237.62 15.07 3.58 3.58 Total: -1.00 -26.96 237.62 -6.24 -33.20 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.14 Total: -2.60 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -0.24 Total: -26.12 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.58 Total: -24.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.96 -6.24 -33.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045809663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.018 kcal (2) G-P(sol) polarization free energy of solvation -26.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds