Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.05489 * 2 1 4 4 C 1.54266 * 110.03324 * 238.58709 * 2 1 3 5 5 C 1.54893 * 104.19489 * 264.32380 * 4 2 1 6 6 C 1.54882 * 102.74916 * 322.05849 * 5 4 2 7 7 C 1.53875 * 110.03464 * 121.41676 * 2 1 3 8 8 C 1.53000 * 110.02996 * 359.95304 * 7 2 1 9 9 C 1.50694 * 110.03346 * 238.56936 * 7 2 1 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 7 2 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 7 2 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 H 1.09002 * 109.46784 * 298.57685 * 1 2 3 18 18 H 1.08999 * 109.47455 * 58.57889 * 1 2 3 19 19 H 1.08995 * 109.46963 * 178.58589 * 1 2 3 20 20 H 1.09004 * 109.46971 * 181.41392 * 3 2 1 21 21 H 1.08996 * 109.47633 * 301.41755 * 3 2 1 22 22 H 1.08998 * 109.47192 * 61.42278 * 3 2 1 23 23 H 1.08996 * 110.48486 * 23.00092 * 4 2 1 24 24 H 1.08997 * 110.48962 * 145.51152 * 4 2 1 25 25 H 1.09002 * 110.75571 * 80.37013 * 5 4 2 26 26 H 1.08994 * 110.75706 * 203.74036 * 5 4 2 27 27 H 1.09003 * 110.48554 * 279.26146 * 6 5 4 28 28 H 1.08998 * 110.49291 * 156.62344 * 6 5 4 29 29 H 1.09000 * 109.46934 * 299.30541 * 8 7 2 30 30 H 1.09000 * 109.47215 * 59.31183 * 8 7 2 31 31 H 1.09001 * 109.47035 * 179.30639 * 8 7 2 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 2.3281 -2.1901 -0.7192 6 6 2.8874 -1.9407 0.7034 7 6 2.0571 -0.7536 1.2337 8 6 0.8862 -1.2659 2.0747 9 6 2.9276 0.1564 2.0614 10 1 3.0958 1.1759 1.7471 11 6 3.5102 -0.3128 3.2197 12 7 3.3057 -1.5544 3.6024 13 14 4.5897 0.8150 4.2454 14 1 5.9978 0.7040 3.7870 15 1 4.1279 2.2178 4.0906 16 1 4.5017 0.4196 5.6741 17 1 -0.3633 0.4916 0.9025 18 1 -0.3634 0.5357 -0.8769 19 1 -0.3633 -1.0273 -0.0254 20 1 3.1443 1.4262 -0.0254 21 1 1.6761 1.9623 -0.8769 22 1 1.7175 1.9471 0.9024 23 1 1.3061 -0.7695 -2.0255 24 1 2.9798 -0.2986 -1.5981 25 1 1.4031 -2.7651 -0.6752 26 1 3.0675 -2.6930 -1.3423 27 1 3.9440 -1.6767 0.6570 28 1 2.7402 -2.8197 1.3308 29 1 0.2851 -0.4218 2.4129 30 1 0.2699 -1.9325 1.4715 31 1 1.2696 -1.8083 2.9390 32 1 3.7159 -1.8846 4.4170 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045809663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -30.876140 kcal Electronic energy + Delta-G solvation = -12057.173820 eV Core-core repulsion = 10209.449064 eV Total energy + Delta-G solvation = -1847.724756 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.33155 -34.67234 -32.80320 -31.20380 -29.14480 -26.04748 -25.84967 -24.05992 -21.04535 -19.27312 -17.19841 -16.71774 -16.07452 -15.56927 -14.67568 -14.11603 -13.92140 -13.61748 -13.29859 -13.22560 -13.10521 -12.63819 -12.39788 -12.20799 -11.98870 -11.48181 -11.37456 -11.20596 -11.14338 -10.88309 -10.52355 -10.24317 -10.20799 -7.92304 -6.01698 1.41208 1.43934 1.51312 2.50357 3.32603 4.09175 4.14563 4.22869 4.68645 4.74070 4.82399 4.96395 5.00252 5.03018 5.09774 5.14329 5.17464 5.23256 5.28764 5.35216 5.43622 5.61751 5.67553 5.70528 5.79405 5.84855 5.92752 6.21299 6.38639 6.63368 7.07910 7.64484 9.09803 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047480 B = 0.016777 C = 0.015474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.579091 B = 1668.565801 C = 1809.023595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 C -0.112 4.112 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.084 4.084 7 C 0.064 3.936 8 C -0.118 4.118 9 C -0.517 4.517 10 H 0.070 0.930 11 C 0.013 3.987 12 N -0.912 5.912 13 Si 0.935 3.065 14 H -0.283 1.283 15 H -0.270 1.270 16 H -0.291 1.291 17 H 0.042 0.958 18 H 0.058 0.942 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 1.898 -7.246 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.069 4.069 3 C -0.169 4.169 4 C -0.142 4.142 5 C -0.161 4.161 6 C -0.123 4.123 7 C 0.064 3.936 8 C -0.176 4.176 9 C -0.556 4.556 10 H 0.088 0.912 11 C -0.184 4.184 12 N -0.552 5.552 13 Si 0.763 3.237 14 H -0.209 1.209 15 H -0.195 1.195 16 H -0.218 1.218 17 H 0.061 0.939 18 H 0.077 0.923 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.240 1.792 -7.091 8.000 hybrid contribution 0.855 0.316 1.178 1.489 sum -2.384 2.108 -5.914 6.716 Atomic orbital electron populations 1.21859 0.94870 1.00962 1.00567 1.21234 0.95003 0.95314 0.95305 1.21736 0.99865 0.95883 0.99431 1.22382 1.00220 0.94922 0.96633 1.22527 1.00002 0.97038 0.96519 1.22130 0.97686 0.98316 0.94134 1.18783 0.91871 0.91856 0.91127 1.21793 0.97145 0.98252 1.00416 1.22052 1.27946 0.98824 1.06746 0.91194 1.25629 0.97960 0.95990 0.98848 1.70063 1.45222 1.15948 1.24004 0.85908 0.79635 0.80000 0.78158 1.20888 1.19505 1.21752 0.93932 0.92306 0.93019 0.94015 0.93150 0.94187 0.90811 0.92522 0.92058 0.91987 0.95927 0.95348 0.95928 0.95411 0.93402 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.19 71.98 0.52 -3.78 16 2 C -0.07 -2.67 0.94 -51.46 -0.05 -2.72 16 3 C -0.11 -4.26 6.86 71.98 0.49 -3.77 16 4 C -0.10 -3.58 5.90 31.67 0.19 -3.39 16 5 C -0.12 -4.54 6.91 31.88 0.22 -4.32 16 6 C -0.08 -3.99 4.98 31.67 0.16 -3.83 16 7 C 0.06 3.04 0.62 -52.20 -0.03 3.01 16 8 C -0.12 -5.70 6.96 71.98 0.50 -5.20 16 9 C -0.52 -27.53 6.98 25.60 0.18 -27.35 16 10 H 0.07 3.64 4.66 -2.91 -0.01 3.63 16 11 C 0.01 0.74 5.18 84.66 0.44 1.18 16 12 N -0.91 -52.37 10.39 21.45 0.22 -52.15 16 13 Si 0.94 44.11 29.54 68.60 2.03 46.14 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 17 H 0.04 1.53 6.76 -2.39 -0.02 1.51 16 18 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 19 H 0.05 1.73 6.72 -2.39 -0.02 1.71 16 20 H 0.04 1.68 7.08 -2.38 -0.02 1.66 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.04 1.61 7.11 -2.39 -0.02 1.60 16 23 H 0.07 2.13 7.84 -2.39 -0.02 2.11 16 24 H 0.06 1.93 7.83 -2.39 -0.02 1.91 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 28 H 0.03 1.44 7.67 -2.39 -0.02 1.42 16 29 H 0.02 1.04 6.78 -2.39 -0.02 1.03 16 30 H 0.03 1.18 6.70 -2.39 -0.02 1.17 16 31 H 0.05 2.60 5.99 -2.39 -0.01 2.59 16 32 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -57.23 237.62 5.93 -51.29 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.07 Total: 4.90 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 2.61 Total: -50.18 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.22 Total: -52.15 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -57.23 5.93 -51.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045809663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.418 kcal (2) G-P(sol) polarization free energy of solvation -57.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds